Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0565 ATGGCTCCTCCGAACGATCCGTTGAATTCCGCCTTGGGACTGGCGTCATTGGACAAGGTTTTTGATTTATCTGACGGGAAATTCACCGTGAGAGGTGTGCCATTACTCTGTCAGGTACCTGATAATGTCACCTTCAGCTCCTTCTCCTCAATCTGTGAACCCCGTGAAGCCCCACCTTCCATCCTTCAGCGTGTCATTGCCACGTCACACAAAGGTGGCTTCTTCGGATTCTCCCAGGTTTCCCCCTCCGACAGATTGACAAACTCGTTGGGTGGTTTCAGCGGCAGAAGCTTCCTTAGCATCTTCCGGTTCAAAACATGGTGGTCCACCCAGTGGGTGGGAAACTCCGGTTCAGACCTACAAATGGAAACCCAGTGGGTCCTCGTACAAGTCCCCGAAATAAAATCCTATGTCGTAATCATTCCCATCATTGAGAAAAGTTTCAGGTCCGCTCTTCACCCTGGCTCTGATGGCCATGTCATGATTTGCGCGGAGAGTGGTTCCACCCGAGTCAAGGCATCGAGTTTCGGTGCAATTGCCTATGTCCACGTGTCTGAAAACCCTTACGACCTGATGAAAGAGGCCTATAGTGCTCTCAGGGTTCACCTCAATACGTTCAGGTTGTTGGAGGAGAAGACGGTGCCGAAAATTGTCGACAAGTTCGGTTGGTGCACGTGGGACGCGTTTTACTTGACGGTGAACCCTGTCGGCGTTTGGCATGGACTTAAGGATTTTGCCGAAGGCGGCGTGGCTCCGAGGTTTGTTATCATTGACGATGGCTGGCAGAGCGTAAATTTTGATGGCGATAACCCCAACGAGGATGCCAAGAATCTTGTTCTAGGTGGGGAACAAATGACCGCGAGGCTTCACAGGCTTGACGAAGGAGACAAGTTCAAAAATTACCGATTAGGACTCCTCTCGGGTCCCAATGCTCCTTCTTTTAACCCCAAGACCGTTAAGGAGTTGATTGCGAAGGGGATTGAAGTTGAGCGTTTGGGGAAGCAGCGTGACGAGGCTGTCTCATCTGGGGGTTCTAATTTGACCGAGATTGAGTCGAGGATCGTGAAGGTTAAAAAGGAGATTGATGATCTCTTTGGTGGGGAGGGAGAGCGAAGCGAAGATTGTGGAGGGCGTGGTGGGATTAAGGCTTTCACAAGGGACTTGAGGACTGAGTTCAAAGGTTTGGATGATGTGTACGTGTGGCACGCGCTCTGTGGCGCTTGGGGTGGTGTGAGGCCAGGAGCCACACATCTGGACTCGAAAATAATCCCTTGCAAACTCTCCCCTGGCCTTGATGGGACAATGCAAGATCTTGCTGTGGTTAACATAGTCAAAGGTTCCGTAGGGCTCGTTCATCCTCGTCAGGCTAATGACTTCTACGATTCCATGCACTCTTATCTTGCCCAGTCTGGTGTTACCGGAGTCAAAATTGACGTCATTCAtACTCTTGAATATGTGTGCGAGGAATATGGAGGCAGAGTCGAGCTTGCCAAGGCTTATTACGATGGGTTGACAAATTCCGTTGTCAAGAACTTCAATGGAAGTGGAATCATCGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTTGGAACCAAGCAAATCCCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCCAATGGGGACCCAATGGGAGTGTTCTGGTTACAGGGGGTGCACATGATTCATTGTTCCTACAACAGCTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTTCATGCGGGTTCGAGGGCTATTTGCGGTGGTCCTGTCTATTTGAGTGACAATGTGGGCTCTCATGACTTTGATCTCATTAAGAAGCTTGTGTTCCCTGATGGCACCGTGCCCAGATGCATACACTTTCCCCTTCCAACAAGAGACTGCCTTTTCAGGAACCCTCTCTCTGACCAAAAAACAGTTCTCAAAATTTGGAATTTCAATAAGTATGGAGGAGTTATTGGTGCTTTCAACTGTCAAGGGGCTGGTTGGGACCCTAAGGTGCAGAAGATCAGGGGTTTCCCTGAGTGCTACAAGCCAATATCCTGTACTGTGCATGTAACTGAGGTTGAATGGGACCAAAAGAGAGAAGCAACCCATATGGGTAAAGCAGAGGAATATGTTGTGTACCTCAATCAGGCTGAGGAACTGCATTTGATGACCCCCAAGTCTGAACCACTCCAAATTACTATCCAACCTTCCACTTTTGAGCTCTACAACTTTGTCCCAGTCACAAAGCTAGATGGCAGCATCAAATTTGCACCAATTGGGCTGACAAACATGTTCAACAGTGGTGGGACAATTCAAGAATTGGAGTATGTTGAGATGGGTGCTAAGCTTAAGGTTAAAGGTGGTGGGAGTTTCCTTGCTTACTCAAGTGTATCACCAAAGAAGTTCCAACTGAATGGTTCTGATGTTGCTTTTGAGTGGCTGCCTGGTGGCAAACTGACTCTCAACCTTGCTTGGATTGAAGAGGCTGGCGGGGTTTCTGATTTGGCAATTTTCTTCTAG 2553 0.4881 MAPPNDPLNSALGLASLDKVFDLSDGKFTVRGVPLLCQVPDNVTFSSFSSICEPREAPPSILQRVIATSHKGGFFGFSQVSPSDRLTNSLGGFSGRSFLSIFRFKTWWSTQWVGNSGSDLQMETQWVLVQVPEIKSYVVIIPIIEKSFRSALHPGSDGHVMICAESGSTRVKASSFGAIAYVHVSENPYDLMKEAYSALRVHLNTFRLLEEKTVPKIVDKFGWCTWDAFYLTVNPVGVWHGLKDFAEGGVAPRFVIIDDGWQSVNFDGDNPNEDAKNLVLGGEQMTARLHRLDEGDKFKNYRLGLLSGPNAPSFNPKTVKELIAKGIEVERLGKQRDEAVSSGGSNLTEIESRIVKVKKEIDDLFGGEGERSEDCGGRGGIKAFTRDLRTEFKGLDDVYVWHALCGAWGGVRPGATHLDSKIIPCKLSPGLDGTMQDLAVVNIVKGSVGLVHPRQANDFYDSMHSYLAQSGVTGVKIDVIHTLEYVCEEYGGRVELAKAYYDGLTNSVVKNFNGSGIIASMQQCNDFFFLGTKQIPMGRVGDDFWFQDPNGDPMGVFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPVYLSDNVGSHDFDLIKKLVFPDGTVPRCIHFPLPTRDCLFRNPLSDQKTVLKIWNFNKYGGVIGAFNCQGAGWDPKVQKIRGFPECYKPISCTVHVTEVEWDQKREATHMGKAEEYVVYLNQAEELHLMTPKSEPLQITIQPSTFELYNFVPVTKLDGSIKFAPIGLTNMFNSGGTIQELEYVEMGAKLKVKGGGSFLAYSSVSPKKFQLNGSDVAFEWLPGGKLTLNLAWIEEAGGVSDLAIFF 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0565 850 Gene3D Aldolase class I 219 623 IPR013785 -
Ssu4g0565 850 SUPERFAMILY (Trans)glycosidases 216 623 IPR017853 -
Ssu4g0565 850 PANTHER GALACTINOL--SUCROSE GALACTOSYLTRANSFERASE 4-RELATED 1 850 - -
Ssu4g0565 850 Pfam Raffinose synthase or seed imbibition protein Sip1 21 833 IPR008811 -
Ssu4g0565 850 PANTHER - 1 850 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0565 Ssu-Chr4 8988863 8991833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0565 21 850 Glycoside Hydrolase AT4G01970 59.834 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0565 K06611 - gmx:100815922 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0565 4 8988863 8991833 Ssu4g0565 4 8988863 8991833 ECH