Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0562 atggcaaATAGACCGGATCCAGATGCTGATGATGATTTTCGTGAGCTTTATAAGGAGTACACTGGCCCCCAGGGATCTGCTGCTACGAACACGCAAGAGAGgccaaaatcaaataaaaggtCTAATGCAGGGTCTGATGAGGAGGAGGAAGCTCGGGACCCTAATGCTGTCCCAACCGATTTCACCAGCCGAGAAGCTAAGGTTTGGGAGGCTAAGTCAAAGGCTACGGAAAGGAAttggaagaaaaggaaagaggagGAAATGATCTGCAAACTTTGTGGAGAATCAGGGCATTTCACTCAGGGCTGTCCATCTACTCTTGGAGCAAATCGCAAGTCTCAAGATTTCTTTGAAAGGGTACCTGCTAGAGACAAAAATGTGCGGGCTCTTTTCACAGATAAAGTTATAAGCAAGATTGAAAGGGATATTGGCTGCAAAATTAAGATGGATGAGAAGTTTATTATTGTCAGTGGTAAGGATAGATTAATTTTGGCAAAAGGTGTTGATGCTGTGCACAAGATTCGAGAGGAGGGTGATCAAAGGGGATCATCTAGTTCTCAAATGACACGATCAAGATCACCTGAGAGAAGTCCTGTTAGTGCTCGGTTTCAACGCTCTGAGCCCCAGAGGTCTCATTCTGGACCACGAAATACATCTCAGTTTCAACAAAGGTTTGGTAGGCAAGAGAGGGCTGTTGAAGACCGTATCCGGGAGGACGTTCAAAAGTTTGCTAGAGGTTCTCCACAAGCTTATGGAAATAGTGGAGCTAGAGGTCGTTCAAGCCGGTCAAGATCTCCAAGACATGCCCCTTATACAGGGAACTCTTATAATTCATTTGAAGGCCGTAATCAAAACATGGGTGCTTATAGGAATGATGTGTGGGATTCTCATAGAAGAGAATCTGGTATCCAGCCTGGTCATCAGTTTGATTACAATGCCTCCCCACAGACTTTAGAAGAATTAGAGTTGGAGTATAAGAATGAGGCAACAGAGCTAATGAAAATTCGTGAcagagaagaagatgaagaaaacTTCAAGCATCGTGAGGCTATTAGAGATTTGAGGGAGAAGTATATGAGCAAAGTTGCCTTGGTAAGGGCCACGCATGCAAAACAGTGGGAAGAGTTTCTTCAGCTTGATGCACAGAGGCATCAACAGCAGGCAATCCAACAAATGTCATCTGGTTATCGGGGTTTTAAACAGCAGAGCTTTCCTGAATATGATGGGTCCACTGCCAATCCTCCTCCCTATACTGGGACCAATTTACCCTTGGAATCGAGGAACAGGTTCTCAGACAACATGGAAACTTATCCTACTAGGCCTCATGATAATTTTGGTGAATTTCATAGGCGTGGAGATTTTGCAAAAGCGTACAACAgatattaa 1386 0.4214 MANRPDPDADDDFRELYKEYTGPQGSAATNTQERPKSNKRSNAGSDEEEEARDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEEMICKLCGESGHFTQGCPSTLGANRKSQDFFERVPARDKNVRALFTDKVISKIERDIGCKIKMDEKFIIVSGKDRLILAKGVDAVHKIREEGDQRGSSSSQMTRSRSPERSPVSARFQRSEPQRSHSGPRNTSQFQQRFGRQERAVEDRIREDVQKFARGSPQAYGNSGARGRSSRSRSPRHAPYTGNSYNSFEGRNQNMGAYRNDVWDSHRRESGIQPGHQFDYNASPQTLEELELEYKNEATELMKIRDREEDEENFKHREAIRDLREKYMSKVALVRATHAKQWEEFLQLDAQRHQQQAIQQMSSGYRGFKQQSFPEYDGSTANPPPYTGTNLPLESRNRFSDNMETYPTRPHDNFGEFHRRGDFAKAYNRY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0562 461 MobiDBLite consensus disorder prediction 227 242 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 253 284 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 175 284 - -
Ssu4g0562 461 SUPERFAMILY Retrovirus zinc finger-like domains 77 109 IPR036875 GO:0003676|GO:0008270
Ssu4g0562 461 MobiDBLite consensus disorder prediction 400 423 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 181 226 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 39 55 - -
Ssu4g0562 461 ProSiteProfiles Zinc finger CCHC-type profile. 90 105 IPR001878 GO:0003676|GO:0008270
Ssu4g0562 461 MobiDBLite consensus disorder prediction 1 18 - -
Ssu4g0562 461 Coils Coil 318 338 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 1 68 - -
Ssu4g0562 461 PANTHER OS01G0252900 PROTEIN 1 461 - -
Ssu4g0562 461 MobiDBLite consensus disorder prediction 23 38 - -
Ssu4g0562 461 PANTHER OS01G0252900 PROTEIN 1 461 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0562 - - gmx:100806099 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0562 4 8913102 8915894 Ssu4g0562 4 8913102 8915894 ECH