Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0560 ATGGGTACGGAGAGAAAGAGGAAGGTGAGCTTGTTCGATGTGGTAGACGATTCTGTGGCGAAGACGGCGAAATCCAATGGCGGCGCCAATAACAGCGTTGCCAACACTCTCGTCAATCGCTGGACTGCAAGGCCTTACTCCCAAAGGTACTTCGAGATTTTGGAGAAGAGGAAAGCCCTCCCCGTTTGGCACCAGAAAGACGAGTTTTTGCAGGTTCTGAAAGATAACCAGACTTTGATTCTCGTCGGCGAGACTGGTAGTGGCAAGACCACTCAGATTCCTCAGTTTGTTTTGGATGCTGTCGATTTAGAGACGCCGGATAGGCGCAGGAAGATGATGATTGCGTGTACTCAGCCTCGGAGAGTGGCTGCGATGTCTGTTTCACGTCGTGTGGCTGAAGAGATGGATGTAACTATTGGGGAAGAGGTTGGTTACAGTATTAGATTTGAAGACTGCACTAGTGCAAGGACAGTTTTGAAGTATCTTACGGATGGTATGCTCTTGAGAGAAGCAATGACAGATCCGCTTTTGGAACGCTACAAGGTTATTATTCTTGATGAGGCGCATGAGAGGACTTTGGCCACGGATGTCCTATTTGGCCTTCTGAAGGAGGTGCTTAAAAATAGACCTGACTTGAAGTTGGTTGTTATGAGTGCGACTCTTGAAGCTGAAAAGTTTCAGGGCTATTTTTATGGTGCCCCTCTCATGAAAGTTCCTGGAAGGCTACATCCTGTTGAAATTTTCTATACTCAGGAAGCTGAAAGGGATTACTTGGAGGCTGCCATTAGGACAGTGGTGCAGATACACATGTGTGAACCTTTGGGAGATATACTTGTATTTCTGACTGGAGAGGAAGAGATAGAAGATGCTTGCcgcaaaataacaaaagaaatttctaATCTGGGAGACCAGGTGGGCCCTGTCAAAGTGGTACCCCTGTATTCTACTCTTCCTCCAGCTATGCAGCAGAAGATTTTTGATTCACCTCCACCTCCACTGAAGGAGGGTGGGCCTCCTGGAAGGAAGATTGTGGTATCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGCATTGTTTATGTCATTGACCCCGGTTTTGCTAAGCAGAAGGTTTATAACCCACGAGTTCGTGTGGAGTCGTTATTAGTGTCACCAATATCAAAAGCTAGTGCACATCAGAGATCAGGGCGTGCTGGACGAACTCAACCAGGGAAATGCTTTAGACTGTACACTGAGAAAAGTTTCAATAATGATCTTCAGCCACAGACCTATCCTGAAATTTTGAGATCAAATCTTGCCAACACAGTTCTTACTTTGAAGAAACTGGGTATAGATGATTTAGTGCATTTTGATTTCATGGACCCTCCTGCTCCTGAGACCTTAATGCGTGCATTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGATGGTAACTTAACAAAACTGGGTGAGATTATGAGTGAATTTCCCTTGGACCCACAGATGTCAAAGATGCTCGTTGTCAGTCCTGAATTCAACTGTTCAAATGAGATTCTGTCAGTTTCTGCCATGCTTTCAgtACCCAATTGCTTTGTCCGGCCTAGGGAGGCACAAAAAGCTGCGGATGAAGCTAAAGCTAGGTTTGGGCACATTGATGGAGATCATCTCACGCTCTTGAATGTCTACCATGCATACAAGCAAAATAATGAGGATCCCTCTTGGTGCTATGATAACTTCATCAATCATAGGGCATTGAAAGCAGCTGATAATGTGAGACAACAATTAGTGCGTATCATGGCCCGGTTTAATCTGAAGTTATGCAGCACTGACTTCAATAGCCGTGACTACTATATCAACATAAGAAAAGCTATGCTAGCTGGGTATTTCATGCAGGTAGCCCATCTGGAGCGTACAGGACACTACTTGACAGTGAAAGACAATCAGGTGGTGCATTTGCATCCATCAAATTGCCTGGACCACAAGCCTGAATGGGTcatttataatgaatatgttCTCACCAGTCGAAATTTTATTCGTACTGTTATAGACATTCGTGGGGAATGGTTGGTTGATGTAGCACCACATTACTATGATTTGTCTAATTTTCCACAATGTGAGGCAAAACGTGTTCTTGAGAGACTTTACAAGAAGCGAGAGAAGGAAAAGGAGGAAGCCAGGAGCCGCAGATGA 2175 0.4414 MGTERKRKVSLFDVVDDSVAKTAKSNGGANNSVANTLVNRWTARPYSQRYFEILEKRKALPVWHQKDEFLQVLKDNQTLILVGETGSGKTTQIPQFVLDAVDLETPDRRRKMMIACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCTSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPGRLHPVEIFYTQEAERDYLEAAIRTVVQIHMCEPLGDILVFLTGEEEIEDACRKITKEISNLGDQVGPVKVVPLYSTLPPAMQQKIFDSPPPPLKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYDNFINHRALKAADNVRQQLVRIMARFNLKLCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVIDIRGEWLVDVAPHYYDLSNFPQCEAKRVLERLYKKREKEKEEARSRR 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0560 724 CDD SF2_C_RHA 243 411 - -
Ssu4g0560 724 Gene3D - 9 241 IPR027417 -
Ssu4g0560 724 SMART ultradead3 57 248 IPR014001 -
Ssu4g0560 724 Pfam Helicase associated domain (HA2) 465 553 IPR007502 GO:0004386
Ssu4g0560 724 SMART helicmild6 285 403 IPR001650 -
Ssu4g0560 724 CDD DEXHc_DHX15 48 238 IPR044756 GO:0003724|GO:0005524
Ssu4g0560 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 70 239 IPR014001 -
Ssu4g0560 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 606 IPR027417 -
Ssu4g0560 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 264 444 IPR001650 -
Ssu4g0560 724 Coils Coil 703 723 - -
Ssu4g0560 724 Pfam Helicase conserved C-terminal domain 271 402 IPR001650 -
Ssu4g0560 724 PANTHER ATP-DEPENDENT RNA HELICASE 1 723 - -
Ssu4g0560 724 Gene3D - 242 424 IPR027417 -
Ssu4g0560 724 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DEAH3-RELATED 1 723 - -
Ssu4g0560 724 Pfam AAA domain 76 217 IPR003593 -
Ssu4g0560 724 Gene3D - 449 605 - -
Ssu4g0560 724 SMART ha2_5 464 554 IPR007502 GO:0004386
Ssu4g0560 724 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 615 691 IPR011709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0560 Ssu-Chr4 8882488 8885930 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0560 K12820 - gmx:100817506 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0560 4 8882488 8885930 Ssu4g0560 4 8882488 8885930 ECH