Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0558 ATGGCAGCTCTAACCCCAATTTGGTCAACAACGAGATTGAGCGGTCAACACCGTGGCCACGAACTAAAATTCTCAGTTTCCAATTTCATACCTCGGAATCAAAAGAGAATCTCCAAGACAATCCGATTGGCCTCTGCTCCCAACCACAGCCAGAATCAGTCTTCTTCTCCCGGATTATACTCCGCCCAGAAATTCGACCTCACCGCATCCAACGTCGACCTCGTCCTCGACGACGTTCGCCCCTACCTCATCGCCGACGGCGGCAACGTCGACGTCGTCTCCGTCGAAGACGGCGTCATATCTCTCCGTCTCCAAGGAGCGTGCGAGAGTTGCCCCAGCTCCACCACGACAATGAAGATGGGGATCGAGCGCGTTCTTAAGGAAAAATTCGGAGACGCCGTGAAGGATATACAACAAGTGTACGATAACGAGCCAGGGGAGACAACGGTTGAGGCGGTGAATAATCATCTTGAGATATTGAGACCGGCCATTAAGAATTACGGAGGCAGCGTGGAAGTGTTATCCGTTGAAGGCGGAGAGTGCCACGTTAACTATGTTGGACCTGACTCCATTGGATCGGGAATCAGAGCAGCGATCAAGGAGAAGTTTCCAGACATTCTCAATGTTACCTTCACCGCCTAG 642 0.5187 MAALTPIWSTTRLSGQHRGHELKFSVSNFIPRNQKRISKTIRLASAPNHSQNQSSSPGLYSAQKFDLTASNVDLVLDDVRPYLIADGGNVDVVSVEDGVISLRLQGACESCPSSTTTMKMGIERVLKEKFGDAVKDIQQVYDNEPGETTVEAVNNHLEILRPAIKNYGGSVEVLSVEGGECHVNYVGPDSIGSGIRAAIKEKFPDILNVTFTA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0558 213 Pfam NifU-like domain 72 132 IPR001075 GO:0005506|GO:0016226|GO:0051536
Ssu4g0558 213 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 70 140 IPR034904 -
Ssu4g0558 213 Gene3D - 149 211 IPR034904 -
Ssu4g0558 213 PANTHER NIFU-LIKE PROTEIN 1, CHLOROPLASTIC 39 212 - -
Ssu4g0558 213 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 147 210 IPR034904 -
Ssu4g0558 213 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 39 212 - -
Ssu4g0558 213 Gene3D - 64 148 IPR034904 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0558 Ssu-Chr4 8847835 8848569 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0558 K22074 - gmx:100527356 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0558 4 8847835 8848569 Ssu4g0558 4 8847835 8848569 ECH