Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0552 ATGGCTCCCGAGCTGGTCCCCACCGCTGCGAAATCCGGTGCTGCGTTCACGAAACCCGCGACTCTGGCGAGGCGTGCCTACGTGACATTCCTTGCCGGAAAAGGCGACTACGTGAAAGGGGTTGTTGGCCTCGCGAAAGGGTTGCGAAGGGTGAAAACGGCGTACCCGTTGGTGGTGGCTGTCCTTCCCGACGTGCCGGAGGAGCACCGTAAGATCCTGGAGTCTCAGGGCTGCATCGTCCGTGAGATCGAGCCCGTTTATCCACCAGAAAACCAGACTCAGTTCGCTATGGCGTATTACGTCCTCAACTATTCCAAGCTCCGCATATGGGAGTTTGTGGAATACAGCAAAATGATATACTTGGACGGAGACATTCAGGTATTAGAGAACATAGACCACCTATTTGACCTGCCAGACGGTAACTTTTACGCTGTGATGGATTGCTTCTGTGAGAAGACTTGGAGTCATACCCGGCAGTACAAGGTGGGGTACTGCCAGCAGTGCCCGGAGAAGGTGCAGTGGCCCATTGAATTGGGCCAGCCCCCTTCTCTTTACTTCAACGCTGGCATGTTCGTGTTCGAGCCCAGCATCGCCACCTACCATGACCTACTGAAGACGGTGCAAGTCACCACTCCCACCTCATTCGCGGAACAGGACTTCTTGAACATGTACTTCAAGGACATTTACAGGCCAATCCCTCTCAAGTACAACCTTGTCCTCGCCATGCTGTGGCGTCACCCGGAGAATGTTAACCTTCACGAAGTCAAGGTTGTTCACTATTGTGCAGCGggatCGAAGCCATGGAGATATACTGGGAAGGAAGAGAATATGCAGAGGGAGGACATAAAGATGCTGGTGCAGAAATGGTGGGATATCTACAATGACTCTTCGCTTGACTACAAGCCACTGAGTGCAACTGAAGGACCAGCGGATGGTGTTGACATTGAGCCATTCGTGCAGGCTCTATCGGAGGTTGGTCTTGTTCAATATGTCACTGCGCCTTCAGCAGCTTAG 1014 0.5266 MAPELVPTAAKSGAAFTKPATLARRAYVTFLAGKGDYVKGVVGLAKGLRRVKTAYPLVVAVLPDVPEEHRKILESQGCIVREIEPVYPPENQTQFAMAYYVLNYSKLRIWEFVEYSKMIYLDGDIQVLENIDHLFDLPDGNFYAVMDCFCEKTWSHTRQYKVGYCQQCPEKVQWPIELGQPPSLYFNAGMFVFEPSIATYHDLLKTVQVTTPTSFAEQDFLNMYFKDIYRPIPLKYNLVLAMLWRHPENVNLHEVKVVHYCAAGSKPWRYTGKEENMQREDIKMLVQKWWDIYNDSSLDYKPLSATEGPADGVDIEPFVQALSEVGLVQYVTAPSAA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0552 337 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 23 300 IPR029044 -
Ssu4g0552 337 CDD GT8_Glycogenin 25 296 - -
Ssu4g0552 337 PANTHER GLYCOGENIN SUBFAMILY MEMBER 1 337 - -
Ssu4g0552 337 Pfam Glycosyl transferase family 8 30 271 IPR002495 GO:0016757
Ssu4g0552 337 SUPERFAMILY Nucleotide-diphospho-sugar transferases 27 301 IPR029044 -
Ssu4g0552 337 PANTHER GALACTINOL SYNTHASE 1 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0552 Ssu-Chr4 8652357 8654075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0552 1 337 Glycosyltransferase AT1G56600 71.720 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0552 K18819 - gmx:100809287 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0552 4 8652357 8654075 Ssu4g0552 4 8652357 8654075 ECH