Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0550 ATGGCTGCGATCGCGAGAGCTCACGTGTTTGGTGTTGTGAGTTTTCAGCTCAAAGAAGCCGAAATGCCGTTTGCATGTTCCAGCTTAATCCGGAAGCATATTGGAGAGTGTCCTCAGCGCAATGTGGCTCTAAGACGCAGAGGAAATGCTACGATTCTTCCCAAAATCAGAGCTCAGAATCTTCCCGACTATGTTCCAGAATCCGAGTTTTATAAAGTAGAAGCCATTCTCAGGCCCTGGCGAGTCCCGCAGGTTTCTTCGGCTTTGTTGAAAATGGGAATTCGCGGTGTCACTGTATCTGATGTCAGGGGCTTTGGTGCTCAGGGTGGTTCAAAAGAGAGGCAGGGAGGCTCTGAATTTTCTGAAGACAATTTTGTTGCCAAAGTTAAAATGGAAATAGTTGTGAGAAAGGACCAGGTATGTAGACAGTAG 432 0.4699 MAAIARAHVFGVVSFQLKEAEMPFACSSLIRKHIGECPQRNVALRRRGNATILPKIRAQNLPDYVPESEFYKVEAILRPWRVPQVSSALLKMGIRGVTVSDVRGFGAQGGSKERQGGSEFSEDNFVAKVKMEIVVRKDQVCRQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0550 143 PANTHER NITROGEN REGULATORY PROTEIN P-II HOMOLOG 35 140 - -
Ssu4g0550 143 Pfam Nitrogen regulatory protein P-II 71 140 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 PANTHER NITROGEN REGULATORY PROTEIN P-II 35 140 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 SMART P_II_3 73 143 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 SUPERFAMILY GlnB-like 71 140 IPR011322 -
Ssu4g0550 143 ProSiteProfiles P-II protein family profile. 70 143 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 PRINTS P-II protein signature 71 86 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 PRINTS P-II protein signature 92 110 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 PRINTS P-II protein signature 122 143 IPR002187 GO:0006808|GO:0030234
Ssu4g0550 143 Gene3D - 59 142 IPR015867 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0550 - - gmx:100499915 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0550 4 8636981 8638163 Ssu4g0550 4 8636981 8638163 ECH