Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0544 ATGTCCAAAGAAAGGTTGCAGGGTAAGGTGGCTATTGTGACTGGCGGAGCCACCGGAATAGGAGCAGATGCTGTGAAAATATTCGTGGAAAACGGTGCATCCGTAGTCATAGCAGACATCAAGGATGAATTGGGTCACAACTTGGCAACTTCAATCGGGTTAGACAGAGTGAGTTACCACCACTGCGATGTGAGAGACGAGAAACAAGTTGAGGAAACCGTAGCTTTCACCTTAGAGAAATATAAGAGTGTGGACATCTTGCTCAGTAATGCTGGCATCGCAGGCTCTTTATCAACCATACTAGACTTCGATCTGAACGAATTCGACAACACCATGGCCGTGAACGTTCATGGCGCAGTAGCAGCCATCAAGCACACGGCACGTGTCATGGTAGCCAGAAAGACACGTGGGTCCATAATTTGCACGGCCAGCGTGGCTGGTTCCTTCGCTGGATGCGCGGGTCATGATTACACCACATCCAAACACGGTCTAGTGGGCCTTGTTCGCTCCACGTGTAGTGAGCTTGGAGCTTATGGGATCAGAGTGAATTCCATATCGCCATTTGCAATTGCCACGCCTCTTACTTGTGGCGCACTCGATATGGAGCCTGCCGAAGTTGAAGCTGCAGGCAATGCTTTTGCGAATTTGCACGGAATTACGTTGAAGGCTACTCATATCGTGAAAGCTGCTCTGTTTCTTGCCTCTGATGAATCAGCTTATATCAGTGGACACAACTTGGTGGTCGATGGAGGCTTCTCCGTCGTTAATCGCTGGCttcctataattaaaaaataa 795 0.483 MSKERLQGKVAIVTGGATGIGADAVKIFVENGASVVIADIKDELGHNLATSIGLDRVSYHHCDVRDEKQVEETVAFTLEKYKSVDILLSNAGIAGSLSTILDFDLNEFDNTMAVNVHGAVAAIKHTARVMVARKTRGSIICTASVAGSFAGCAGHDYTTSKHGLVGLVRSTCSELGAYGIRVNSISPFAIATPLTCGALDMEPAEVEAAGNAFANLHGITLKATHIVKAALFLASDESAYISGHNLVVDGGFSVVNRWLPIIKK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0544 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Ssu4g0544 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Ssu4g0544 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Ssu4g0544 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Ssu4g0544 264 PANTHER OXIDOREDUCTASE-RELATED 1 263 - -
Ssu4g0544 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Ssu4g0544 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Ssu4g0544 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Ssu4g0544 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 263 - -
Ssu4g0544 264 Gene3D - 1 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0544 Ssu-Chr4 8525883 8526742 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0544 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 29.615 3.56e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0544 - - gmx:100798299 441.039