Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0542 ATGTCCAAACAAAGGTTACAGGGTAAGGTGGCTGTTGTGACCGGTGGAGCCACGGGAATAGGAGCAGAGGTTGTGAAAATATTTGTGGAAAATGGTGCATCTGTAGTCATAGCAGACATTAAGGACGAATTGGGTCACAACTTGGCAACTTCAATCGGTTTAGACAGAGTGAGTTACCGCCATTGCGATGTGAGAGACGAGAAACAAGTTGAGGAAACCATAACTTTCACCTTGGAGAAATATAAGAGTGTGGACATCTTGCTCAGCAATGCTGGCATCGCAGGCCCTTTATCAACCATACTAGACTTCGATATGAACGAATTTGACAACACCATGGTAGTGAATGTTCGCGGCGCAGCAGCAGCCATCAAGCACGTAGCACGTGTCATGGTGGCCAGAAAGACACGTGGATCCATAATTTGCACAGCTAGCGTGGCTGGTTCCTTCGCTGGATGCGCGGGTCATGATTACACTGCATCTAAACACGGTCTTGTGGGCCTTGTTCGTTCCACGTGTAGTGAGCTTGGAGCTTATGGGATCAGAGTGAATTCTGTATCGCCGTTTGCAGTTGCCACGCCTCTTACTTGTGGCGCACTCGATATGGAGCCTGCTCAAGTTGAAGCTGCGGGTAATGCTCTTGCGAATTTGCACGGAATTACGTTGAAGGCTACTCATATCGCCGAAGCTGCTCTGTTTCTTGCCTCTGATGATTCGGCTTATATCAGTGGACACAACTTGGTGGTCGATGGAGGCTTCTCTGTCATTAATCACGGTCTTcctagtattaaaaattaa 795 0.473 MSKQRLQGKVAVVTGGATGIGAEVVKIFVENGASVVIADIKDELGHNLATSIGLDRVSYRHCDVRDEKQVEETITFTLEKYKSVDILLSNAGIAGPLSTILDFDMNEFDNTMVVNVRGAAAAIKHVARVMVARKTRGSIICTASVAGSFAGCAGHDYTASKHGLVGLVRSTCSELGAYGIRVNSVSPFAVATPLTCGALDMEPAQVEAAGNALANLHGITLKATHIAEAALFLASDDSAYISGHNLVVDGGFSVINHGLPSIKN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0542 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Ssu4g0542 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Ssu4g0542 264 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Ssu4g0542 264 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Ssu4g0542 264 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
Ssu4g0542 264 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 144 172 IPR020904 GO:0016491
Ssu4g0542 264 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 263 - -
Ssu4g0542 264 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 254 IPR036291 -
Ssu4g0542 264 PANTHER OXIDOREDUCTASE-RELATED 1 263 - -
Ssu4g0542 264 Gene3D - 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0542 Ssu-Chr4 8508485 8509792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0542 6 260 Acyl Lipid Metabolism Gene Families AT3G55290 29.368 1.87e-24 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0542 - - gmx:100798299 453.366