Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0541 ATGCTGAAACAAAGGTTGAAGGGTAAGGTGGCTCTTATCACCGGGGCAGCTAGTGGTATTGGGGAAGAGACAGCGAGATTGTTCGCTGAACATGGAGCACTTATTGTTGCAGCGGATATTCAAGATGAACAAGGTCGCCAAGTTGCTGCTTCAATAGGGTCAGAGAGAGTGACTTACCACCATTGTGATGTGAGAGATGAAAACCAAGTTGAGGAAACGGTCAATTTCACTTTGGAAAAACATGGTCGCATAGATATCCTGTTCAGTAACGCTGGAATAATAGGTTCCCTATCTGGCATCCTTGACCTTGATCTGAATGAGTTTGACAACACCATGGCCACAAATGTTCGTGGGGTAGCTGCCACAATTAAGCACTCCGCACGTGCCATGGTTGCCAAAAGCACCCGTGGATCCATCATATGCACCACCAGTGTGGCTGCTTCCATTGGTGGAACGGGTCCTCATGGTTATACCATATCAAAACATGCTCTTCTGGGGTTGGTGAAATCAGCTTGTAGTGAACTTGGGGCTTATGGAATCAGAGTTAATAGCATATCCCCTTTTGGGGTTGCCACACCTCTTGCATGCAAGGCTTTCAACTTTGAACCTGAGCAAGTTGAAGCTAATAGCTGCTCCCAGGCTAATCTGAAGGGTGTTGTGTTGAAGGCTCGGCACATAGCAGAAGCAGCTTTGTTTCTGGCTTCTGATGAAGCTGTTTACATCAGTGGTCACAACTTGGCGGTGGATGGTGGCTTCTCAGTGGTCAATCGTAGTTATTCTTTCACACCCGTAGACCCAAATAGTTTTGTGGCTGATTGGCATTGA 825 0.4691 MLKQRLKGKVALITGAASGIGEETARLFAEHGALIVAADIQDEQGRQVAASIGSERVTYHHCDVRDENQVEETVNFTLEKHGRIDILFSNAGIIGSLSGILDLDLNEFDNTMATNVRGVAATIKHSARAMVAKSTRGSIICTTSVAASIGGTGPHGYTISKHALLGLVKSACSELGAYGIRVNSISPFGVATPLACKAFNFEPEQVEANSCSQANLKGVVLKARHIAEAALFLASDEAVYISGHNLAVDGGFSVVNRSYSFTPVDPNSFVADWH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0541 274 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 255 IPR036291 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 157 176 IPR002347 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 178 195 IPR002347 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 216 236 IPR002347 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Ssu4g0541 274 PRINTS Glucose/ribitol dehydrogenase family signature 131 147 IPR002347 -
Ssu4g0541 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 IPR002347 -
Ssu4g0541 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Ssu4g0541 274 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 IPR002347 -
Ssu4g0541 274 Gene3D - 1 260 - -
Ssu4g0541 274 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 1 260 - -
Ssu4g0541 274 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B 1 260 - -
Ssu4g0541 274 Pfam Enoyl-(Acyl carrier protein) reductase 15 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0541 Ssu-Chr4 8496701 8497720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0541 6 251 Acyl Lipid Metabolism Gene Families AT3G55290 31.801 6.91e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0541 - - gmx:100811279 490.73