Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0538 ATGGATTCGGCGAATGGAGCAATGGCGGTGGAGAACCAACAGTTAACCGAATGGCGCATGCATCGTGGTCCCTACCTCGGTGACATCTCAGCTCTCTGTTTTCTCCACCTTCCCAATCTctctcctcctcttcttctcgcTGGTTTGGGTTCGGAAATTACGGTGTACGACTTAGAACTGAGCAAGAGAATAAGATCCTTCTCTGTATTCGAAGGAGTTCGCGTGCACGGAATCGCTTCTAGTTTCCCTCAAGAGACCCTGATTGCTGTGTTTGGGGAAACGAGAGTGAAACTATTTAGCTTCGCATTTGATAGCGTTTCTGGGAGCGCAGAGTTGACGCTCGTTCATTTGTTGCCGAAGTTTGGTCACTGGGTTTTGGATGTTTGCTTCCTCAAGGGATGCTTACCTCATTCCAATGTGGAGGGTCATTTTCTAGCTGTAGGATGTAGCGATAATTCAGTTCACATTTGGGATATTTCTAACTCTAATACGGTTCTCAAGGTTCAATCTCCAGTACGGTGCCTTCTGTACTCAATGCGATTATGGGGTCACAATCTTGAAGTTCTCCGTATTGCATCTGGTACAATATTTAACGAGATTATTGTTTGGAAAGTGGCCCCTCAACACAATAAATCTTCAAGTCATCAAGAAAACCATGATCATCAGAGCATTTCATCCTCCAATTGCTGCCAGCTAGAGGATCAACTGTATGAGGCTATTCATGTATGTAAACTTATTGGACATGAAGGTTCAATCTTTCGACTAGCATGGTCGTCTTGTGGATCTAAACTGGTATCTGTCTCTGATGACCGGAGTGCACGTGTCTGGACTGTTCCTATTGAAAGGGAACATTCATTGTGCCATGATCCCATTTCCCTTGTCTTATTTGGACATAATGCTCGGGTTTGGGACTGCTGTATTTCTGATAATTTGATTGTCACTGTCAGTGAGGATTGTACATGTCGTATATGGGGAGTTGATGGTAAACAACTGCAAGTCATTAAGGAGCACATATTGCCTGGACTTTTGACGTTCTGTGAACTGAGTATCTACAGTGGAAGGGGTATATGGAGATGTTTGTACGACACAAATTCATCACTTCTTATAACTGCTGGGTTTGACTCTGCCATTAAAGTACATCAACGTCACGCTTCTCTGTCCAGGGGCTTGGAAGCAGCACAAGGGTCCCCTGGTAAGACAGAGGTGTTTTCCATTTGCATTCCTAATGTGTTGGAGCATATTGGATTTATGGACAGCAAGAGTGAATATGTTCGATGTTTGTGCTTTTCCTATCAGGATTCTCTTTATGTTGCTACCAATCATGGTTATGTCCACCATGCTAAATTATGTGATACTGGAGGTGCTCAGTGGAATCAACTTGTCCAGGTCAGCAATGGGGCACCAATTATCTGTATGGATTTATTGTCCAAGGACTCTTTTGAACTTGAATGTGGTGCCAAGGATTGGATTGCTATTGGAGATGGTAAAGGAAATATGACAATTATTGCAGTTACTAATGATGATTGTACTCCTACAGTGAGATTGTGCTTTACTTGGCCAGCTGAAATGGAGAGACAGCTCTTGAGTACTTATTGGTGTAAATCTCTGGGATGTAGGTATGTCTTCACGGCTGATCCTAGAGGAACATTGAAACTCTGGAGGTTGCCTGACCCCTCACAATCTGATCTTCAGAGCTCCATGAGGAGTAACAATGTATCGTGCATAGTAgagttcaaatcaaattatgGAATGCGGATAATGTGTTTGGATGCATGCATGGAGGAAGAGGTCCTCGCATGTGGAGATGTACGTGGTAATATGGTTCTGTTCCCTTTGCTAAAAAATCTGGTGCTGGGCATATCTGCTGTACAAGAAACGAAGATACCTCCACTAAATCATTTCAAAGGAGTTCATGGGATTTCAACTGTCTCCAGTGTTTCTGTGACTAAGCTTGGCTATAATCATATTGAGATATGCTCAACTGGGGCAGATGGTTGTATATGCTATCTGGAATATGATAAAGAAATGCAGAATTTGCAATTTACGGGGATGAAACAAGTGAAAGAATTGACTTTGATTGAATATGTTTCTGTGGATAACAACTCTGGTGATAGATTGTCAAGCAGCTATGCAGCTGGTTTTGCATCAGTTGATTTCATAGTATGGAACTTAGTTAAAGAGAATAAGGTGGTGAACATTCCATGTGGTGGATGGCGGCGTCCTCATTCCTATTATCTAGGTGATATACCAGAGGCAAAGAACTGCTTTGCCTTTGTCAAGGATGAAATGATACATATACATAGACACTGGATTCATAATAGAGATGGGAAGATATACCCTCAAAGTTTGCACATGCAGTTCCACGGTAGAGAGATACATTCCTTGTGCTTTATCTCTGATGATGTGCTTGTTGGAGATAATTATAAGTGCACCTTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAAGATGGAACTGTGAGGTTGACTTGGTACTCTCCAGGTATTGAAAATTGGTCCATGTCAAAACTGCTTGGTGAACATGTTGGAGGATCAGCGGTAAGATCAATTTGTTGTGTGTCAAAAGTACACACCATTTCATCAGAAACAGGTGATGTACCTGATGGGAGGATTGAACTGAATGCTGCTGTTGAGAAGAAAGACAATCCAACATTACTTATATCAGTGGGTGCAAAGCGTGTCTTAACTTCttggatattaaaaaataggagGCTGGACAACAAAAATGACTTCCTAACTGATTATCAATATAATTCAGAAGGAGTTGATGATCTGtttttgtcaagtttgtccTCATCAATGACGTTCCAGTGGCTTTCCACTGATATGCCAGCCAAATATTCAATTGCACACAATACTCCCGAAAATAATGTGGAGAAAATAGGTGTTGCTGAAAATGTGTCTAATACAAATAATGATGCTAGAATGGGATCATTGATTTCTGAAAGTGGAATGGCAAACTTGATCAGAGATAAACATGAAGATGACTGGAGATATCTAGCAGTTACTGCTTTTCTTGTTAAATGTTCTGGTTCCAGGATATCTGtctgttttgttgttgttgcatgTTCAGATGCTACACTTATGTTGCGGGCTTTAATTTTGCCATTTCGCTTGTGGTTTGACGTTGCTTTACTGGTTCCTTTATTGGCACCTGTTTTGACATTGCAGCATATCATCTTTCCCATGTGTGGGCCTTATAAAGCAAACATCCAAGTTGGAAATGTTTATATTGTGATTAGTGGGTCTACTGACGGAAGTGTTGCTTTCTGGGACCTAACTGACAGTGTCAAAGCTTTTATGCAGCGGGTTTCAGTTTGTAATGTTGAAAAGTTTTTTGATTGTCAAAAACGACCGCGCACAGGGAGAGGAAGTCAGGGTGGTAGACGGTGTAGATCTTTAAGCAGTGACTTgtcaaagaagaaacaaaacagCACTCTGGTCACTTTGAAAGCCAATGACAAGACCAAAAGTTACATGGCAAGTGATTCTGAAGACATCAAGATGGTTTGTTCTCAATCCACACATATGGCTCCCCCGGAGTTAGAAAACAAGATTGATAATTCGTCAGTGGAAATATGTGAAATACAGCCTCTATGCCTTTTGCAAAATATTCACCAATCTGGTGTCAACTGTCTCCACGTTTCAGAGATAAAGGGTGGGCAAAATACTGATAACTGTCATGTATACAGCATAGTTAGTGGGGGTGATGATCAAGCACTTCATCATCTCATGGTTGAATTATCAcctaaatcaataaatttaaatgatgggATTTTGAACCCAGACATCACACATTTTGTCACTGTACCTGAATATGGAAAGGACATCAATTTTCAAAGTCAGAgcaagaattataaaattagattcTTAAATTACGAAAAGTTACCCTCTGCCCACAGCTCTTCTGTCAAAGGTGTCTGGACAGACGGATCTTGGGCGTTTTCAACTGGACTTGATCAGCGGGTCAGATGCTGGCATCTTCAACGGAGCAAAATAATTGAGCATTCATATCTAATAGTTAGTGTACCAGAACCAGAAGCGTTATCTGCTAGGGCTTGTGGCAGGAACCATTATCAGATTGCTGTTGCTGGAAGAGGGAtgcaaataattgatttttctgAATCTTGA 4152 0.3972 MDSANGAMAVENQQLTEWRMHRGPYLGDISALCFLHLPNLSPPLLLAGLGSEITVYDLELSKRIRSFSVFEGVRVHGIASSFPQETLIAVFGETRVKLFSFAFDSVSGSAELTLVHLLPKFGHWVLDVCFLKGCLPHSNVEGHFLAVGCSDNSVHIWDISNSNTVLKVQSPVRCLLYSMRLWGHNLEVLRIASGTIFNEIIVWKVAPQHNKSSSHQENHDHQSISSSNCCQLEDQLYEAIHVCKLIGHEGSIFRLAWSSCGSKLVSVSDDRSARVWTVPIEREHSLCHDPISLVLFGHNARVWDCCISDNLIVTVSEDCTCRIWGVDGKQLQVIKEHILPGLLTFCELSIYSGRGIWRCLYDTNSSLLITAGFDSAIKVHQRHASLSRGLEAAQGSPGKTEVFSICIPNVLEHIGFMDSKSEYVRCLCFSYQDSLYVATNHGYVHHAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSFELECGAKDWIAIGDGKGNMTIIAVTNDDCTPTVRLCFTWPAEMERQLLSTYWCKSLGCRYVFTADPRGTLKLWRLPDPSQSDLQSSMRSNNVSCIVEFKSNYGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLGISAVQETKIPPLNHFKGVHGISTVSSVSVTKLGYNHIEICSTGADGCICYLEYDKEMQNLQFTGMKQVKELTLIEYVSVDNNSGDRLSSSYAAGFASVDFIVWNLVKENKVVNIPCGGWRRPHSYYLGDIPEAKNCFAFVKDEMIHIHRHWIHNRDGKIYPQSLHMQFHGREIHSLCFISDDVLVGDNYKCTFSKSSWIATGCEDGTVRLTWYSPGIENWSMSKLLGEHVGGSAVRSICCVSKVHTISSETGDVPDGRIELNAAVEKKDNPTLLISVGAKRVLTSWILKNRRLDNKNDFLTDYQYNSEGVDDLFLSSLSSSMTFQWLSTDMPAKYSIAHNTPENNVEKIGVAENVSNTNNDARMGSLISESGMANLIRDKHEDDWRYLAVTAFLVKCSGSRISVCFVVVACSDATLMLRALILPFRLWFDVALLVPLLAPVLTLQHIIFPMCGPYKANIQVGNVYIVISGSTDGSVAFWDLTDSVKAFMQRVSVCNVEKFFDCQKRPRTGRGSQGGRRCRSLSSDLSKKKQNSTLVTLKANDKTKSYMASDSEDIKMVCSQSTHMAPPELENKIDNSSVEICEIQPLCLLQNIHQSGVNCLHVSEIKGGQNTDNCHVYSIVSGGDDQALHHLMVELSPKSINLNDGILNPDITHFVTVPEYGKDINFQSQSKNYKIRFLNYEKLPSAHSSSVKGVWTDGSWAFSTGLDQRVRCWHLQRSKIIEHSYLIVSVPEPEALSARACGRNHYQIAVAGRGMQIIDFSES 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0538 1383 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 278 IPR001680 GO:0005515
Ssu4g0538 1383 PANTHER WD REPEAT PROTEIN 20 1381 - -
Ssu4g0538 1383 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 167 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 288 325 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 779 831 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 1063 1099 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 1291 1334 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 512 554 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 238 277 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 111 158 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 571 611 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 344 381 IPR001680 GO:0005515
Ssu4g0538 1383 SMART WD40_4 1202 1252 IPR001680 GO:0005515
Ssu4g0538 1383 Gene3D - 1079 1382 IPR015943 GO:0005515
Ssu4g0538 1383 SUPERFAMILY WD40 repeat-like 121 555 IPR036322 GO:0005515
Ssu4g0538 1383 Gene3D - 6 238 IPR015943 GO:0005515
Ssu4g0538 1383 SUPERFAMILY WD40 repeat-like 1085 1341 IPR036322 GO:0005515
Ssu4g0538 1383 SUPERFAMILY WD40 repeat-like 25 168 IPR036322 GO:0005515
Ssu4g0538 1383 SUPERFAMILY WD40 repeat-like 526 1102 IPR036322 GO:0005515
Ssu4g0538 1383 Pfam WD domain, G-beta repeat 122 158 IPR001680 GO:0005515
Ssu4g0538 1383 Pfam WD domain, G-beta repeat 296 324 IPR001680 GO:0005515
Ssu4g0538 1383 Pfam WD domain, G-beta repeat 244 276 IPR001680 GO:0005515
Ssu4g0538 1383 Pfam WD domain, G-beta repeat 787 829 IPR001680 GO:0005515
Ssu4g0538 1383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 278 - -
Ssu4g0538 1383 Gene3D - 346 674 IPR015943 GO:0005515
Ssu4g0538 1383 Gene3D - 239 341 IPR015943 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0538 K24737 - gmx:100780968 2465.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0538 4 8431252 8442750 Ssu4g0538 4 8431252 8442750 ECH