Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0528 atgatcgTCCTGGAATTACAAGACAACAAGAGCCACGACAAAAAGCCTCAAAGGGCATGCCCAGTGAAAGGAAGATGGCCAAGGTTGCTGGCCCAATGGGCTTATGTGGCATGTCGACTCGTCACGAATCATGACAATCCTCACTTTCACCTCACTGTCTCTGCTGAAACTCGAAAGCAAAGCAGAGAAGAGGAGCTGCGGAACTTTTCATTTCGTCTCAGCGAGACAGATAGAAAAGCATTAACGATGAGATTTCATGGTAGGTTTATTATTTGCCGTTATCTTTCTCAGTTGCCAAAGCAATTCGAGTCAAAGTCCAAATTCCCTCTCCCGAATTTCCGGCTTCGAGCTCCATTTTTCCTCCGTTCTTATTCTACCGAAGTGCAACCTCAACTGTCCCCGGGGCTGTTGAACATAATGGAACAAAGACTCTCCGCTATTGAGTACAGGACTGCTTGTCTTAACAATTTTCTAAATCAGCCAGAAGCATCACCATCAGAGTATGCAAAAGCTAACAAGGAGCTTCGGAGGTTAAGTGGTTCTGTGGACCTTATTAATGAATTGAGGGCCAAACAGAAGGAAATTGACGGCTTGAAGTCACTAATGGCTGAATGTTCTGAGGATAAAGACATACTTAATATGGCTACAGAGGAAATGGGCCAGGccatagaggaagaaaaaagactGCAAAATTTGCTGCTGAAGTCATTGCTTCCTAAGGATGATGCTGATGAAAAAGATTGCATTTTGGAGGTGCGAGCAGGCACTGGTGGGGAGGAGGCTTCCTTGTTTGCAATGGATATCTTTAGAATGTATGAGAAGTATGCTCTCAAGAAAGGCTGGAAGTTTGAAGTAGTAGATATAGCTCAATCTGATCTTAAAGGATACAAGGAGGCTAGTGCAGCAATTGCAGGAGTTGGTGTTTTTGGGAAACTAAAATTTGAGAGTGGAATTCATAGAGTCCAGCGAGTTCCTGTGACAGAAAAGTCAGGACGTATTCATACTAGTGCTGTTTCTGTTGCAATCCTTCCTCAGGCTGATGAGGTGGATGTTCAATTGAAGAATGAAGACTTAAAAATTGATACCTATAGATCTGGTGGTTCAGGTGGTCAGCATGTCAATACTACCAACAGTGCTGTTAGAATAACCCACATTCCAACAGGGATTGTGATTGCTATACAAGATGAGCGTTCTCAACATATGAACAAGGCCAAAGCTCTCAAGGTACTGTGTGCAAAACTATATGAAATGGAAAGGCTCAGAATTCAGAGTAGTCGATCAAAGCTTCGATCAGAGCAGATTGGTAGTGGGGATAGATCTGAACGCATCAGAACATACAATTTTCCTCAGGGTCGTGTAACTGATCATAGAGTTGGTATTACTTATCACTCCGTAGATGATGTGATGCAAGGTGAAAATCTTGATGTCTTCATTGATGCTCTTCTATTGCAAGAAGAAATGGATGCAATTGCAACTTTTAGTTCGTCTCAGTAA 1494 0.419 MIVLELQDNKSHDKKPQRACPVKGRWPRLLAQWAYVACRLVTNHDNPHFHLTVSAETRKQSREEELRNFSFRLSETDRKALTMRFHGRFIICRYLSQLPKQFESKSKFPLPNFRLRAPFFLRSYSTEVQPQLSPGLLNIMEQRLSAIEYRTACLNNFLNQPEASPSEYAKANKELRRLSGSVDLINELRAKQKEIDGLKSLMAECSEDKDILNMATEEMGQAIEEEKRLQNLLLKSLLPKDDADEKDCILEVRAGTGGEEASLFAMDIFRMYEKYALKKGWKFEVVDIAQSDLKGYKEASAAIAGVGVFGKLKFESGIHRVQRVPVTEKSGRIHTSAVSVAILPQADEVDVQLKNEDLKIDTYRSGGSGGQHVNTTNSAVRITHIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEMERLRIQSSRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITYHSVDDVMQGENLDVFIDALLLQEEMDAIATFSSSQ 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0528 497 Hamap Peptide chain release factor 1 [prfA]. 140 494 IPR004373 GO:0006415|GO:0016149
Ssu4g0528 497 Pfam PCRF domain 150 340 IPR005139 GO:0006415
Ssu4g0528 497 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 364 380 IPR000352 GO:0003747|GO:0006415
Ssu4g0528 497 Pfam RF-1 domain 347 457 IPR000352 GO:0003747|GO:0006415
Ssu4g0528 497 Gene3D - 136 242 - -
Ssu4g0528 497 Gene3D - 346 441 - -
Ssu4g0528 497 Coils Coil 212 232 - -
Ssu4g0528 497 PANTHER LD18447P 119 495 - -
Ssu4g0528 497 SUPERFAMILY Release factor 164 485 IPR045853 -
Ssu4g0528 497 PANTHER LD18447P 119 495 - -
Ssu4g0528 497 Coils Coil 188 208 - -
Ssu4g0528 497 TIGRFAM prfA: peptide chain release factor 1 141 494 IPR004373 GO:0006415|GO:0016149
Ssu4g0528 497 Gene3D - 250 478 - -
Ssu4g0528 497 SMART PCRF_a_2 200 315 IPR005139 GO:0006415
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0528 Ssu-Chr4 8340313 8346475 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0528 K02835 - gmx:100800412 732.25