Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0526 atgcgTTGCGTGAATAGATTGTTGTTTGGAACGCCATGTTCCCGCTCCCGCAACATGTGTACGGTTACATCCGTAAAGCTGAACTACATGATCGACGCTTACATacaagacaacaacataaacCATGCTCGCAAGCTGTTTGACGAAAACCCCACGTCCCGCAACCTCGTATCCTGGAACATGATGCTGACAGCCTACATCAAACACCATCAAATTGAACATGCCCACGACCTGTTCGATCAAATGCCCCTCAAAGACGCAGTTTCCTGGAATATCATGCTCTCTGGTTTTCACATGACCACAAACTCTGATGGGTTGTACCCATGTTTCTTGCAAATGGGAAGAGCTGGTGTGGCCCCCGATGACTATACCATCTCCACATTTCTCAGAGCAGTTATAAGTACTGAGTTGGATGTTTTGGTCCCCCAGGTTCATGCTCGAGCACTGCACTTGGCACTTAACTTGAGTGTGTTTGTTGGGTCTTCGTTGATCAGAGCTTATGCGAGTTTAAGAGAGGAGGAGGCTTTTAAGCGAGTGTTTGATGATATATTGGTGAAAGATGTCACGTCTTGGAATGCTTTGGTTTCTGGTTATATGGAAGTGGGAAGTATAGCTGATGCACAAACAACCTTTGATATGATGCCCCAGAGAAACATAATTTCCTGGACTACTTTGGTCAATGGTTATATCAGGAACAAGAGGATAAACAAAGCAAGGTCTGTTTTTAACAAAATGAGTGAGAGGAATGTGGTGTCTTGGACGGTAATGATTAGTGGGTATGTGCAAAATAAGAGATTTATGGATgcattgaatctttttcttctgATGTTTAAGTCAGGAACTCGTCCCAATCATTTCACTTTTTCAAGTGTGTTGGACGCATGTGCTGGTTGTTCCTCTCTTTTGACGGGAATGCAGGTGCACCTGTGTGTTATCAAGTCTGGCATACCAGAGGATGTCATCTCATTGACCTCACTCGTGGATATGTATGCAAAATGTGGGGATACAGATGCAGCATTTCGTGTTTTTGTGTCCATTCAGAATAAGAATTTGGTGTCGTGGAATTCAATAATTGGTGGCTATGCCAGGCACGGGCTAGCTACCCGGGCACTGGAGGAGTTTGATAGGATGAAAAAAGCTGGTGTTACACCAGATGAAGTTACATTTGTAAATATGTTGTCAGCATGTGTGCATGCAGGTCTTGTTGAAGAAGGAGAAAAGTACTTCACTTCTATGCTGACCAAGTATGGAATCCAAGCAGAGATGGAGCACTACACTTGCATGGTGGATCTCTATGGAAGAGCTGGGCAATTTGATCAAGCAGAAAAATTGATCAAGAATATGCCATTTGAACCTGACGTGGTGTTGTGGGGTGTGTTGCTCGCAGCTTGTGGTCTgcattcaaatttaaaacttggaGAGTATGCTGCAGAGAGGATCCGCAAACTGGAAAGAAGTCATCCTGTTTCTTACTCGGTACTTTCAAAGATCCAAGGTGAGAAAGGAATATGGAGCAGTGTAAATGAATTGAGGGACATTATGAAGGAGAGACAAATCAAAAAGCAGAAGGCAATTAGCTGGGTTGAATAA 1590 0.4208 MRCVNRLLFGTPCSRSRNMCTVTSVKLNYMIDAYIQDNNINHARKLFDENPTSRNLVSWNMMLTAYIKHHQIEHAHDLFDQMPLKDAVSWNIMLSGFHMTTNSDGLYPCFLQMGRAGVAPDDYTISTFLRAVISTELDVLVPQVHARALHLALNLSVFVGSSLIRAYASLREEEAFKRVFDDILVKDVTSWNALVSGYMEVGSIADAQTTFDMMPQRNIISWTTLVNGYIRNKRINKARSVFNKMSERNVVSWTVMISGYVQNKRFMDALNLFLLMFKSGTRPNHFTFSSVLDACAGCSSLLTGMQVHLCVIKSGIPEDVISLTSLVDMYAKCGDTDAAFRVFVSIQNKNLVSWNSIIGGYARHGLATRALEEFDRMKKAGVTPDEVTFVNMLSACVHAGLVEEGEKYFTSMLTKYGIQAEMEHYTCMVDLYGRAGQFDQAEKLIKNMPFEPDVVLWGVLLAACGLHSNLKLGEYAAERIRKLERSHPVSYSVLSKIQGEKGIWSSVNELRDIMKERQIKKQKAISWVE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 251 284 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 220 251 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 57 82 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 425 448 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 352 386 IPR002885 -
Ssu4g0526 529 TIGRFAM PPR: pentatricopeptide repeat domain 387 415 IPR002885 -
Ssu4g0526 529 Gene3D Tetratricopeptide repeat domain 218 308 IPR011990 GO:0005515
Ssu4g0526 529 Gene3D Tetratricopeptide repeat domain 14 143 IPR011990 GO:0005515
Ssu4g0526 529 Gene3D Tetratricopeptide repeat domain 144 217 IPR011990 GO:0005515
Ssu4g0526 529 Pfam PPR repeat 190 219 IPR002885 -
Ssu4g0526 529 Pfam PPR repeat 28 49 IPR002885 -
Ssu4g0526 529 Pfam PPR repeat 424 448 IPR002885 -
Ssu4g0526 529 Pfam PPR repeat 57 83 IPR002885 -
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 248 IPR002885 -
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 420 IPR002885 -
Ssu4g0526 529 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 18 527 - -
Ssu4g0526 529 Pfam PPR repeat family 248 296 IPR002885 -
Ssu4g0526 529 Pfam PPR repeat family 349 397 IPR002885 -
Ssu4g0526 529 Pfam E motif 467 529 IPR046848 -
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 217 IPR002885 -
Ssu4g0526 529 Gene3D Tetratricopeptide repeat domain 367 529 IPR011990 GO:0005515
Ssu4g0526 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Ssu4g0526 529 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 18 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0526 Ssu-Chr4 8330696 8332285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0526 62 529 Glycoside Hydrolase AT3G49170 32.749 2.88e-88 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0526 - - gmx:102665683 941.414