Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0519 ATGGCTAACCCAACACAACCTAATGTTGGGTTCACCCCTGAGAGAGAGAGTCCAAACCCAGAGAAGAGTCCAATTCCGCCCCCTCCAAGTTTTGTAGCAGCGTCACCTGGTTTTCCTCCTGCAAAATTACATTTACAGCGAGATCAAGCTTCTTCCCGTTCCGTTAAAACCCCAAGCGTTGTTTTATCACCAGTCAATGGGGTTACCACTGGCAGTCCCGTTCCTCACATGAGCACCCCTCCCGGACCTCCGGTTTTTACGTCGCCGGTCCGTCCTGCCGCCGGTCCGTTTCGCACCTCGCCTGCATCGCCTCAGCCGCTTGCATTTTCTTCAGGCTCTTCTTTGCCAACGTCATCGTCGCCGCCGCAATTTTCAAATGGATCGTTTGAGTTGCAGCACCAAGTTTCTGATAGTATAGAGGACCATGTTCCAGTTGGGGAGTCATCCATCGTTCTTTTTTCAGCTCATAagGTATTGAAACAGAAGAAACAAGCTAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCTCCTGGGAGGGAGGTCTCAATGGGCCCTCAGGTAATACAGCGTGATCCTCATCGCTGCCAAAGCTGTGGTGCTTATGCAAATATATATTGCAATATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGCAAGTGATGGCGAGTACATTGCACATAGCAAGGAAGATCTTCGCAGATTTCCGGAATTATCTTTGCCCATGTTTGACTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCGGTTTCAGACTCCAGAATGTCTGCCCCAATTGTTCTTGTTATAGATGAATGTTTAGATGAACCTCACCTACACCATCTACAAAGCTCTTTGCATGCTTTTGTTGATTCTCTCCCACCAACAACGAGATTAGGAATTGTACTATATGGTCGTACTGTATCGGTGTATGATCTTTCAGAAGAGTCTATGGCATCTGCCGACGTGCTTCCTGGGGACAAATCACCAAGTCAAGAATCTTTGAAAGCATTGATTTATGGTACTGGTATATACTTGTCACCTATGCATACTTCGCTGGCTGTAGCACATTCCATATTTTCATCATTGAGGGCATACAAGTTGAATATACCAGAAGCTTCCCGAGATCGGTGCCTAGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCCCGGGGGGTGGTCAAAAGGGCGGGGGGAAATAGTAGAATTATTGTCTGTGCTGGCGGACCGAACACTTATGGCCCTGGATCTGTTCCTCATTCTTTTAGTCACCCTAATTATCCTTACATGGAAAAAACagcaattaaatggatggaGAACCTTGGTCGTGAGGCTCATCGACACAACactataattgatattttatgtgCTGGAACATGCCCTGTAAGAGTTCCTATCGTACATCCTCTTGCAAAAACATCAGGTGGAGTTTTGGTTCTCCATGATGATTTTGGGGAAGCCTTTGGTGTTAATTTGCAAAGGGCATCTGCCAGATCAGCAGGCTCTCATGGTTTGTTAGAATTGCGCACTTCAGATGATATTGTCATTACTCAAGTTGTTGGTCCTGGGGAAGAGTCACATGTAGATACCcatgaaacatttaaaaatgaCACTGCTCTTTATATTCAAATGCTAAGTGTTGAAGAAACACAAAGTTTCTCTCTCTCCATGGAAACTGAAGGAGATATCAAAAGTGATTTTGTCTTTTTCCAATTTGCAATTCAGTATTCAAATGTGTATCAAGCTGATGTGTCGAGGGTCATTACTGTTAGACTGCCAACAGTAGATAGTATCTCTGCATATCTTGAGAGTGTTCAGGATGAAGTGGCCACTGTCCTCGTTGCAAAAAGAACCCTGTTACGAGCCAAAAACCATTCTGATGCAATTGATATGCGAGCAACAATAGATGAAAGAATCAAGGATATTGCTTTAAAATTTGGTTCTCAATTACCTAAATCAAAACTTCATAGCTTCCCAAAGGAGCTTTCTCTCCTACCAGAGCTCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGCCATGAAGATGAGAGGTCTGTGTTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTATCACTCAGAATGGTAGCTCCTCGTTGTCTAATGCACAGGGAGGGGGGAACTTTTGAGGAACTACCAGCATATGATCTTGCTATGCAGTCTGATGCTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAGGGAAGAAGTGCTGCTGCTCTAGCTGCATGTAGGACGTTGGCTGAAGAGCTGACTGAGTACCGATTTCCAGCTCCTCGCATCCTTGCATTTAAGGAGGGTAGCTCCCAGGCTCGGTATTTTGTCTCTCGTCTCATTCCAGCTCACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCGCAACTGAGGTCCTTGACATCAGAACAGCGGACAAAGCTGAAAGCCAGTTTTGTTCACTTCGACGATCCTAGTTTCTGTGAATGGATGCGAAGTTTGAAAGTGGTGCCACCACAACCTAGCTGA 2619 0.4475 MANPTQPNVGFTPERESPNPEKSPIPPPPSFVAASPGFPPAKLHLQRDQASSRSVKTPSVVLSPVNGVTTGSPVPHMSTPPGPPVFTSPVRPAAGPFRTSPASPQPLAFSSGSSLPTSSSPPQFSNGSFELQHQVSDSIEDHVPVGESSIVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSMGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNASDGEYIAHSKEDLRRFPELSLPMFDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRLGIVLYGRTVSVYDLSEESMASADVLPGDKSPSQESLKALIYGTGIYLSPMHTSLAVAHSIFSSLRAYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRAGGNSRIIVCAGGPNTYGPGSVPHSFSHPNYPYMEKTAIKWMENLGREAHRHNTIIDILCAGTCPVRVPIVHPLAKTSGGVLVLHDDFGEAFGVNLQRASARSAGSHGLLELRTSDDIVITQVVGPGEESHVDTHETFKNDTALYIQMLSVEETQSFSLSMETEGDIKSDFVFFQFAIQYSNVYQADVSRVITVRLPTVDSISAYLESVQDEVATVLVAKRTLLRAKNHSDAIDMRATIDERIKDIALKFGSQLPKSKLHSFPKELSLLPELLFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEYRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTSEQRTKLKASFVHFDDPSFCEWMRSLKVVPPQPS 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0519 872 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 59 872 - -
Ssu4g0519 872 MobiDBLite consensus disorder prediction 103 128 - -
Ssu4g0519 872 Pfam Sec23/Sec24 zinc finger 193 231 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu4g0519 872 Pfam Sec23/Sec24 beta-sandwich domain 519 610 IPR012990 -
Ssu4g0519 872 CDD trunk_domain 267 510 - -
Ssu4g0519 872 SUPERFAMILY beta-sandwich domain of Sec23/24 26 621 - -
Ssu4g0519 872 MobiDBLite consensus disorder prediction 19 35 - -
Ssu4g0519 872 Pfam Sec23/Sec24 trunk domain 275 501 IPR006896 GO:0006886|GO:0006888|GO:0030127
Ssu4g0519 872 SUPERFAMILY Zn-finger domain of Sec23/24 186 257 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Ssu4g0519 872 MobiDBLite consensus disorder prediction 47 75 - -
Ssu4g0519 872 MobiDBLite consensus disorder prediction 76 90 - -
Ssu4g0519 872 CDD gelsolin_like 725 816 - -
Ssu4g0519 872 Gene3D Severin 739 834 IPR029006 -
Ssu4g0519 872 Gene3D Sec23/Sec24 helical domain 611 731 - -
Ssu4g0519 872 Gene3D - 183 246 - -
Ssu4g0519 872 SUPERFAMILY Helical domain of Sec23/24 623 723 IPR036175 GO:0006886|GO:0006888|GO:0030127
Ssu4g0519 872 Pfam Sec23/Sec24 helical domain 624 720 IPR006900 GO:0006886|GO:0006888|GO:0030127
Ssu4g0519 872 MobiDBLite consensus disorder prediction 1 128 - -
Ssu4g0519 872 SUPERFAMILY vWA-like 274 506 IPR036465 -
Ssu4g0519 872 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 59 872 IPR037364 -
Ssu4g0519 872 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 725 865 IPR036180 -
Ssu4g0519 872 Gene3D von Willebrand factor, type A domain 273 518 IPR036465 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0519 - - gmx:100781518 1628.99