Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0518 ATGTTCGCGTGTGTTCATTCGCGCGTCGTGTTTGTGTATGTTCGTTCCTCTAACGGCGAACGAAGCCTTGCAGGTGCGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGGCTCACGCATCGGAAGGCGGAGAACTTCGGGGAGTGGTATTCTGAGGTTGTTGTGAATGCGGAAATGATTGAGTACTATGATATATCTGGTTGCTATATTCTCAGGCCTTGGTCAATGGCAATTTGGGAGATCATGCAAGAGTTTTTTGATccagaaataaagaaaatgaaaatcaagaaCTGCTACTTCCCTTTGTTTGTGTCTCCCGGAGTTTTGCAAAAGGAGAAGGACCATGTCGAGGGATTTGCCCCTGAGGTTGCTTGGGTGACGAAGTCTGGGGAATCTGAATTAGAAATTCCTGTCGCTATTCGCCCAACAAGTGAAACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGAGGAAGCAGATGCAGAGGTTCTTCAGATACTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCGAACACTGGTCGTGGTATACAAGGTGCAACTTCTCATTGTCTGGGTCAAAATTTTGCTAAAATGTTCGAgataaactttgaaaatgaaaagggaGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGTACTCGAACTattGGGGTCTTGGTGATGGTTCATGGTGATGACAGGGGATTGGTACTACCTCCTAAAGTAGCATCAGTACAAGTCATTGTGATTCCTGTGCCTTACAAAGATGCCAATACTCAAGGAATCTTTGACGCCTGTTCTGAAACTGTTAATACATTGTGTGAAGCGGGTATTCGTGCTGAGTCAGATTTTAGAGATAATTATTCTCCTGGATGGAAGTATTCTCACTGGGAAATGAAAGGTGTTCCTCTAAGAATTGAAATTGGGCCAAAGGATTTAGCAAATAAGCAGGTTCGTGCTGTTCGACGTGATAATGGAGCAAAGATAGACATTGCTAGTGCTGATTTGGTTGGGGAAATAAAAAAGTTGCTTGATAATATTCAACAGAACCTGTTTGATGTCGCAAAACAAAAACGAGATGAATGCATTCAGGTCATACACAATTGGGATGAATTTGTGCAAGCTttgaaccaaagaaaaatgatcTTAGCTCCTTGGTGTGATGAGGAGGAGGTGGAGGCTGATGTCAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACTCTCTGCAGCCCCTTTGATCAGCCAGAACTCCCAGAAGGCACCAAGTGCTTTGCATCAGGAAAGCCTGCAACAAAGTGGACATACTGGGGCAGAAGTTACTAG 1563 0.4255 MFACVHSRVVFVYVRSSNGERSLAGAKKKEVKKETGLGLTHRKAENFGEWYSEVVVNAEMIEYYDISGCYILRPWSMAIWEIMQEFFDPEIKKMKIKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGESELEIPVAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLQILELYRRIYEEYLAVPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGVLVMVHGDDRGLVLPPKVASVQVIVIPVPYKDANTQGIFDACSETVNTLCEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNGAKIDIASADLVGEIKKLLDNIQQNLFDVAKQKRDECIQVIHNWDEFVQALNQRKMILAPWCDEEEVEADVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKPATKWTYWGRSY 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0518 520 Pfam Anticodon binding domain 324 420 IPR004154 -
Ssu4g0518 520 Pfam Prolyl-tRNA synthetase, C-terminal 447 520 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 102 317 IPR006195 -
Ssu4g0518 520 SUPERFAMILY Class II aaRS and biotin synthetases 45 311 IPR045864 -
Ssu4g0518 520 CDD ProRS_core_arch_euk 46 307 IPR033721 -
Ssu4g0518 520 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 139 305 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Ssu4g0518 520 Gene3D - 318 438 IPR036621 -
Ssu4g0518 520 Hamap Proline--tRNA ligase [proS]. 40 520 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 PRINTS Prolyl-tRNA synthetase signature 179 190 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 PRINTS Prolyl-tRNA synthetase signature 139 150 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 PRINTS Prolyl-tRNA synthetase signature 98 116 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 PRINTS Prolyl-tRNA synthetase signature 169 177 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 SMART ProRS_C_1_2 447 520 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 Gene3D Bira Bifunctional Protein; Domain 2 40 317 IPR045864 -
Ssu4g0518 520 SUPERFAMILY Class II aaRS ABD-related 313 439 - -
Ssu4g0518 520 PANTHER PROLINE--TRNA LIGASE, CYTOPLASMIC-LIKE 20 520 - -
Ssu4g0518 520 PANTHER PROLYL-TRNA SYNTHETASE 20 520 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 TIGRFAM proS_fam_I: proline--tRNA ligase 42 520 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 CDD ProRS_anticodon_zinc 313 520 - -
Ssu4g0518 520 Gene3D - 441 520 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Ssu4g0518 520 SUPERFAMILY C-terminal domain of ProRS 443 520 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0518 Ssu-Chr4 8236275 8240523 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0518 K01881 - gmx:100782067 1002.66