Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0514 ATGACATCCCCATTCTTCCCCATTGTTCCTTTCCTCTCCACCTTATTGCCTTGCTCTATTGCTCTTCTCCACTCAGCAACTTTTGGAGTTGAAGGATATGCCTCGCCCTATACACCTGTCTCTTCTCTCATCAGCAAAACTCTTTTTGACACCCTTTTCCTACACAAAGATGACACTGCATGCCCTGCCAAAGACTTCTACACCTACGACTCCTTCATTCGGGCATCCAAATTCTTCCCTGCATTTGGTAACAGCGGTTGTTTAACCACGCGCAAGCGTGAGATTGCCGCATTTCTCGCTCAGATTTCCCATGAAACCACTGGTGGGTGGGCCACTGCACCTGACGGCCCATATGCTTGGGGCTTGTGCTTCAAGGAAGAAATTAATCCTCAGAGTAATTACTGTGATTCTACTAACACCCAATGGCCTTGCTTCCCAGGCAAAAGTTACAAGGGAAGAGGACCCATTCAACTTTCTTGGAACTACAACTATGGTCCAGCAGGGAAGGCGTTGGGATTTGATGGGTTGAGGAACCCAGAGATTGTGGCGAACAATTCTCTGATAGCCTTTGAGACTGCTCTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACGATGTGATGGTGGGAAAATATGTGCCAACAGAAGTTGACATAGCAGCGAATCGAACAGCTGGTTATGGCTTGGTGACTAACATAATCAATGGTGAACTGGAATGTGGAATTCCTGGTGATGCAAGAGTGAATGATCGGATTGGGTTTTTTGAAAGATATACAAAGTTGTTCAACGTAGACACTGGGCCTAACTTGGATTGTGCATATCAGAAACCCTTCTAA 846 0.461 MTSPFFPIVPFLSTLLPCSIALLHSATFGVEGYASPYTPVSSLISKTLFDTLFLHKDDTACPAKDFYTYDSFIRASKFFPAFGNSGCLTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDSTNTQWPCFPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSLIAFETALWFWMTEQKPKPSCHDVMVGKYVPTEVDIAANRTAGYGLVTNIINGELECGIPGDARVNDRIGFFERYTKLFNVDTGPNLDCAYQKPF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0514 281 Gene3D - 47 281 - -
Ssu4g0514 281 PANTHER OS05G0138200 PROTEIN 31 281 - -
Ssu4g0514 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu4g0514 281 PANTHER CHITINASE-RELATED 31 281 - -
Ssu4g0514 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu4g0514 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Ssu4g0514 281 PIRSF Endochitinase 16 281 IPR016283 GO:0004568|GO:0005975
Ssu4g0514 281 CDD chitinase_GH19 44 275 - -
Ssu4g0514 281 Gene3D Endochitinase, domain 2 126 184 - -
Ssu4g0514 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0514 Ssu-Chr4 8172948 8174205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0514 38 281 Glycoside Hydrolase AT1G02360 73.361 2.93e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0514 - - gmx:100784196 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0514 4 8172948 8174205 Ssu7g1884 7 37745450 37746743 PCT