Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0502 ATGGGTTGGAATGAATGTCTCAAAAACCTGGTCATGATGACTGCTTTTATGGTGGCCTTGGTTGTTGTTCAACATGCGGAGTGCGAGGAAGGTAATTATAATATTCATGACTCAGCCCGCATATTTCAGCATGGTGGCTTCGTTCAACGGCATGGCACCAATTTCGTTCTGAATAACAAGCGTTTCTACTTCAATGGATTCAACGCCTACTGGTTAATGTATATGGCATCTGACCCATCCACAAGGCCCAAGGTCACGACCGTTTTACAACAAGCTTCCAACCATGGTTTAACTGTTGCTAGAACTTGGGCTTTCAGTGATGGAGGTTACAGAGCCCTTCAGGTTTCTCCCGGTTTCTATGACGAGAAAGTATTCACGGGATTGGACTTTGTAATATCAGAAGCGGGAAAATATGGGGTGCGTTTGATACTGAGCTTGGTGAACAACTGGAAAGATTTTGGTGGGAAAAATCAGTATGTCCAATGGGTAAAGGAACATGGTCAGTACGTGAACAGCGAAGATGATTTCTTTTCACACCCTGTTGTTAAGCAACACTACAAAAACCATATTAAGGCTGTGCTGACAAGAAAAAACACAATAAGTGGGGTGGCATATAAGGACGATCCTGTCATTTTTGCATGGGAACTTATGAATGAACCCCGTTCCCAACAAGACAACTCCGGAAAAGTTATTCAGGAATGGGTGATTGAGATGGCTGCCTACGTCAAATCCATTGATAGCAATCATTTGCTGGAAATAGGACTCGAAGGTTTCTATGGTGAAACAACGCcagaaaaaaaacaattcaatcctGGGTACTATCTTATTGGTACCGGACTTCATTGCTAA 849 0.4205 MGWNECLKNLVMMTAFMVALVVVQHAECEEGNYNIHDSARIFQHGGFVQRHGTNFVLNNKRFYFNGFNAYWLMYMASDPSTRPKVTTVLQQASNHGLTVARTWAFSDGGYRALQVSPGFYDEKVFTGLDFVISEAGKYGVRLILSLVNNWKDFGGKNQYVQWVKEHGQYVNSEDDFFSHPVVKQHYKNHIKAVLTRKNTISGVAYKDDPVIFAWELMNEPRSQQDNSGKVIQEWVIEMAAYVKSIDSNHLLEIGLEGFYGETTPEKKQFNPGYYLIGTGLHC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0502 282 Gene3D Glycosidases 43 281 - -
Ssu4g0502 282 Pfam Cellulase (glycosyl hydrolase family 5) 62 271 IPR001547 GO:0004553|GO:0071704
Ssu4g0502 282 PANTHER - 13 278 IPR045053 GO:0004553
Ssu4g0502 282 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 13 278 - -
Ssu4g0502 282 SUPERFAMILY (Trans)glycosidases 47 273 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0502 Ssu-Chr4 7945665 7948774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0502 10 271 Glycoside Hydrolase AT5G66460 56.489 8.16e-107 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0502 K19355 - gmx:100787923 500.745