Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0501 ATGGTGTGCGGCAATTTAGAAATGATGGTGGCAAGTGAGCTACATGGATTTTCCATGTCCCTGGGTCCAAAGAAGCCATCCTTCCACCGTGACAGAAATCTGTCTTCCTCATTCTCTGGTAGCAGAGTGAACTTGCCTCATTCAAAGAATGTAGCATCTGGTTTTCCTCTAGGAAAATTCTTTAGTGTTACGCAGCGAAACACAACCAGAAGATTTTTGGCTACTTCTACTCTTGCAGATGTTGCAAATGACTTTATGGCCCTTCAATCACCAATACTTACCGGAAGAGAAGCCAACCCAAAGACTGTTGCATCAATCATATTAGGTGGTGGAGCTGGAACTCGTCTATTCCCCCTTACTCAAAGAAGGGCTAAACCTGCtGTGCCATTTGGAGGATGCTATAGGCTTGTGGACATACCAATGAGTAATTGTATTAACAGtggaattaacaaaatttacGTCCTTACACAATTTAATTCTCAGTCCCTCAACTGCCACATTGCTCGAACATATAATTTGGGAGGTTGCATCAACTTTGGAGGTGGTTTTGTTGAGGTATTGGCAGCAACTCAAACAACCGGGGAATCAGGAAAGAAGTGGTTTCAGGGTACAGCCGATGCAGTAAGACAATTTCTTTGGTTGTTTGAGGATGCTGatcataaaaatatagagaacATTCTGATATTGTGTGGTGATCAGCTTTATCGAATGGATTACATGGAAATTGTGCAGAAGCACATTTATTCATGTGCTGATATATCTGTATCTTGTCTCCCAGTGGATGGCAGTCGGGCCTCTGATTTTGGATTAGTGAAGGTTGATGAAAGAGGACGGATATGCCAGTTCTTGGAAAAACCAAAGGGCGAATTGTTAAGATCTATGCATGTAGATACGAGTATTTTTGGACTATCAGCTCAAGAAGCAAGGAAATTTCCATACATTGCATCAATGGGTATATATGTGTTTAAAATAGATGTTCTGCTAAAAGTTCTCAGGGGTTGTTATCCTAATGCAAATGATTTTGGATCTGAGGTCATTCCAATGGCTGCAAAAGATTTTAATGTCCAGGCATGTCTTTTCAATGGTTATTGGGAAGATATTGGGACTATAAAATCTTTCTTTGATGCGAACTTGGCTCTTATGGATCAGCGGCCCAAGTTTCAGTTGCATGACCAATCCAAGCCTATTTTTACTTGTCCTCGGTTCCTACCACCAACTAAAATGGAGAAGTGTGAGGTAATTAACTCTTTGATTTCAGATGGTTGCTTTTTAAAAGAGTGCACAGTTGAACATTCCATTGTGGGAGTTCGATCAAGACTTGATTCTGGAGTGCAGCTAAAGGATACCATGATGATGGGTGCTGACTATTATCAAACACAGGCTGAAATAGCTTCTCTTTTAGCAGCGGGAAATGTTCCAATAGGCATTGggaaaaattccaaaattgtGAAttgtataattgacaaaaacgCAGGAATTGGAAACAATGTAATTATTGCAAACAAAGACAATGTGCAGGAGGCGGACAGACCATCAGAGGGGTTTTATATTCGATCAGGAATCACGGTGGTGTTAAAAGACACTGTAATAAGCAATGGTACAATCATTTAA 1611 0.3917 MVCGNLEMMVASELHGFSMSLGPKKPSFHRDRNLSSSFSGSRVNLPHSKNVASGFPLGKFFSVTQRNTTRRFLATSTLADVANDFMALQSPILTGREANPKTVASIILGGGAGTRLFPLTQRRAKPAVPFGGCYRLVDIPMSNCINSGINKIYVLTQFNSQSLNCHIARTYNLGGCINFGGGFVEVLAATQTTGESGKKWFQGTADAVRQFLWLFEDADHKNIENILILCGDQLYRMDYMEIVQKHIYSCADISVSCLPVDGSRASDFGLVKVDERGRICQFLEKPKGELLRSMHVDTSIFGLSAQEARKFPYIASMGIYVFKIDVLLKVLRGCYPNANDFGSEVIPMAAKDFNVQACLFNGYWEDIGTIKSFFDANLALMDQRPKFQLHDQSKPIFTCPRFLPPTKMEKCEVINSLISDGCFLKECTVEHSIVGVRSRLDSGVQLKDTMMMGADYYQTQAEIASLLAAGNVPIGIGKNSKIVNCIIDKNAGIGNNVIIANKDNVQEADRPSEGFYIRSGITVVLKDTVISNGTII 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0501 536 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 104 500 IPR011831 GO:0005978|GO:0008878
Ssu4g0501 536 SUPERFAMILY Trimeric LpxA-like enzymes 400 536 IPR011004 -
Ssu4g0501 536 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 200 208 IPR005836 GO:0005978|GO:0008878
Ssu4g0501 536 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 10 536 IPR011831 GO:0005978|GO:0008878
Ssu4g0501 536 Gene3D Hexapeptide repeat proteins 402 536 - -
Ssu4g0501 536 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 315 325 IPR005836 GO:0005978|GO:0008878
Ssu4g0501 536 SUPERFAMILY Nucleotide-diphospho-sugar transferases 103 497 IPR029044 -
Ssu4g0501 536 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 4, CHLOROPLASTIC/AMYLOPLASTIC 10 536 - -
Ssu4g0501 536 CDD LbH_G1P_AT_C 404 530 - -
Ssu4g0501 536 Pfam Nucleotidyl transferase 105 381 IPR005835 GO:0009058|GO:0016779
Ssu4g0501 536 CDD ADP_Glucose_PP 106 367 - -
Ssu4g0501 536 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 91 401 IPR029044 -
Ssu4g0501 536 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 109 128 IPR005836 GO:0005978|GO:0008878
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0501 Ssu-Chr4 7923767 7930494 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0501 K00975 - gmx:100786313 1008.05