Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0498 ATGGCTTCAATTCTGCTCCCCCTAGTAACcttgttcttatttttctccGCTTCTTATCTCCAGATTACTGGGGCGGAAACGCAGCAGTTGACTAGTCTCAAGCTTAATTCTCATATTCTTCAGGAGTCTATTGCTAAACAGATTAACGAAAATCCTGAGGCAGGATGGGAGGCTGCTATAAATCCTCGTTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTTCTTGGAGTCAAACCAGCGCCTGGGAAGGAACTGAGAAGTACACCCGCTGTGACTCACCCAAAGTCTTTGAAATTGCCAAAGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAGCACCATCGGAAGAATTCTAGAGTTTTTACCTGATCCTTGTGCTGATGTGATGATTCAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCATTGTCAGATCGCTTTTGCATTCATTTTGACGTTAATGTATCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGCTGTGATGGGGGATATCCCTTCTATGCATGGCGATACTTAGCCCACCATGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCTTATCAGACTCCCAAGTGTGTTAAAGAATGTGTAAATGGGAACCAGGTTTGGAAGAAGTCAAAGCACTATAGTGTCAATGCATATAGGGTCCACTTTGATCCCCATGATATCATGGCAGAAGTTTACAAAAATGGGCCAGTTGAAGTTGCATTCACTGTTTATGAGGATTTTGCTCACTACAAATCAGGAGTTTACAAACACGTCACAGGTTATGAACTAGGTGGTCATGCAGTAAAGCTAATTGGGTGGGGAACAACTGACGATGGGGAGGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCAGAAGAGGGACAAACGAATGTGGGATTGAAGATGATGTAACTGCTGGTTTGCCTTCCACCAAAAATCTCGCAAGAGAGGTGACTGATATGGATGCTGACGCTGCTGTTTCATTCTGA 1104 0.4339 MASILLPLVTLFLFFSASYLQITGAETQQLTSLKLNSHILQESIAKQINENPEAGWEAAINPRFSNYTVEQFKRLLGVKPAPGKELRSTPAVTHPKSLKLPKNFDARTAWSQCSTIGRILEFLPDPCADVMIQGHCGSCWAFGAVESLSDRFCIHFDVNVSLSVNDLLACCGFLCGSGCDGGYPFYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYQTPKCVKECVNGNQVWKKSKHYSVNAYRVHFDPHDIMAEVYKNGPVEVAFTVYEDFAHYKSGVYKHVTGYELGGHAVKLIGWGTTDDGEDYWLLANQWNREWGDDGYFKIRRGTNECGIEDDVTAGLPSTKNLAREVTDMDADAAVSF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0498 367 CDD Peptidase_C1A_CathepsinB 101 345 - -
Ssu4g0498 367 SUPERFAMILY Cysteine proteinases 45 347 IPR038765 -
Ssu4g0498 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 16 353 - -
Ssu4g0498 367 SMART pept_c1 100 346 IPR000668 GO:0006508|GO:0008234
Ssu4g0498 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 292 302 IPR025660 -
Ssu4g0498 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 133 144 IPR000169 -
Ssu4g0498 367 PANTHER CATHEPSIN B-LIKE PROTEASE 3 16 353 - -
Ssu4g0498 367 PRINTS Papain cysteine protease (C1) family signature 294 304 IPR000668 GO:0006508|GO:0008234
Ssu4g0498 367 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Ssu4g0498 367 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Ssu4g0498 367 Pfam Papain family cysteine protease 129 344 IPR000668 GO:0006508|GO:0008234
Ssu4g0498 367 Gene3D Cysteine proteinases 31 353 - -
Ssu4g0498 367 Pfam Peptidase family C1 propeptide 40 80 IPR012599 GO:0004197|GO:0050790
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0498 Ssu-Chr4 7902153 7908216 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0498 K01363 - gmx:100778103 696.427