Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0497 ATGCTGCGCCTGAAAGCGTTTCGGCCTACGACTGATAAAATCGTTAAGATCCAATTGCATCCGACGCATCCATGGATGGTGACCGCCGATGATTCAGATCGAGTCTCGGTTTGGAACTGGGAGCACCGCCAGTTGGTGTATGAGTTGAAAGCTGGCGGAGTGGACGAGCGACGTTTGGTCGGTGCCAAGTTGGAGAAGCTGGCCGAGGGAGAAACAGAGTCCAAAGGGAAGCCTACAGAAGCCATTCGGGGAGGAAGTGTTAAGCAGGTGAATTTTTATGATGATGATGTACGCTTTTGGCAACTTTGGCATAATCGCTCTGCGGCTGCTGAGGCTCCAACAGCTGTCCATACTTCATCTTTTAGCTCTCCTGCCCCATCAACAAAAGGGAGACATTTTCTTGTCATATGTTGTTTAAACAAAGCTATATTTTTGGACTTGGTGACAATGCGTGGCCGTGATGTACCAAAGCAAGAGCTTGATAACAAGTCCCTTCTatgCATGGAGTTCCTTTATAGAACTGGTGTTGGTGATGGTCCTCTTGTTGCTTTTGGTGCATCTGATGGTGTCATTAGAGTTCTCTCAATGATGACGTGGAAGCTTGTGCGAAGGTACACTGGAGGTCATAAAGGATCTATCTCTTGCTTGATGTCCTTCATGGCTGCTTCTGGTGAGGCTCTTCTGGTTTCGGGTGCTAGTGATGGATTGCTTATAATTTGGAGTGCTGACCACGGACAGGATTCACGTGAACTTGTACCCAAGCTGAGTTTAAAAGCACATGATGGAGGGGTTGTGGCAGTTGAGTTGTCAAGGGTGATGGGAGGTGCTCCTCAGCTAATCACAATTGGTGCAGATAAGACATTAGCCATTTGGGACACCGTCTCCTTTAAGGAGCTGCGGCGTATAAAGCCAGTTCCCAAATTGGCTTGCCACAGTGTGGCTTCTTGGTGCCATCCTCGAGCTCCAAACCTTGATATTCTAACCTGCGTCAAAGATTCTCACATATGGGCAATCGAACATCCCACTTATTCTGCTCTCACGAGGCCATTGTGTGAATTGACCTCAGTTATTCCTCCACAAGCTCTTGCTCCTAATAAGAAACTGAGGGTGTATTGTATGGTTGCACATACTTTGCAGCCACATCTTGTTGCTACTGGAACCAACATTGGTGTGATTATTTGCGAGTTTGATGCTAGATCTCTTCCACCTGTAGCTCCTCTACCAACTCCACCAGACAATAGAGAGCATTCTGCCATATTTGTAATTGAAAGGGAATTAAAGCTATTAAATTTTCAGTTAAACAACTCTGCAAATCCATCTCTTGGAAATAACAGCTCCTTGTCAGAAACTGGAAGACCCAAGGGAGATTTTTTTGAACCATTACCTGTCAAGCAGGGGAAGAAGCACATTAGTACTCCCGTTCCACATGATTCATACTCAGTTCTTTCTGTGAGTAGTTCAGGAAAGTATCTAGCAATTGTTTGGCCAGATATTCCTTATTTCTCTGTCTACAAGGCTAGTGATTGGTCAATTGTTGACTCTGGAAGTGCAAGGCTTCTCGCTTGGGATACTTGTCGTGACAGATTTGCTATATTGGAATCAGCATTACCTCCTAGAATTCCTATAATTCCCAAGGGTAGTTCTTCAAAAAGAGCAAAAGAAGCTGCCGCGGCACaagcagcagcagcagctgctgctgctgcttcGACAGCTTCTGTTCAAGTCCGCATCTTGTTAGATGATGGAACATCAAATATACTAATGAGGTCTGTTGGTGCACGCAGTGAACCAGTCATTGGTTTGCATGGAGGGGCACTGCTTGGCGTTGCCTATCGAACATCTAGGAGAGTCAGTCCTATTGCTGCTACAGCTATTTCAACAATCCAGTCTATGCCCTTATCAGGCTATGGAAGCAGTggtctttcttcttttactaCTTATGATGATGGATTTTCTTCACATAGACCTCCAACTGAGGCAGCACCTCAAAACTTCCAGCTATACAGTTGGGAGACATTCCAGCCCGTGGGGGGTCTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTTGAGTACTGTGCATTTGCATACCAACAATACATAGTCATTTCTTCTTTGCGCCCTCAATATAGATACTTGGGAGATGTTGCAATCCCATATGCTACTAGTGCTGTTTGGCACCGGAGGCAGCTGTTTGTGGCTACCCCAACTACTATAGAAATTGTTTTTGTGGATGCTGGGGTTGCTCAGATTGACATTGAAACTAGGAAGATGAAAGAAGAGCAGAAAATGAAAGAAGCACAGGCAAGAGCAGTCGTAGAGCATGGAGAGTTGGCACTAATTACAGTAGAAGGTCCCCAGTCTGCTAAGGAAGAAAGAATAACATTGAGGCCACCAATGTTGCAGGTGGTTCGATTGGCTTCATTTCAGCATGCTCCTTCAGTGCCGCCTTTCTTAACATTACCAAAACAATCTAGAGTTGATGGTGATGACTCTTGGATGGTAACAGAAGAGAAAAAGGCAGGTGAGGTGGCAGTTGGTGGTGGGGGTGTATCTGTGGCAGTTACTCGTTTTCCGATGGAGCAGAAACGTCCAGTTGGGCCTCTTGTGGTTGTAGGTGTCAGGGATGGAGTTCTTTGGCTAATTGACAGGTACATGTGTGCTCATGCCTTGTCCTTGAGTCATCCTGGTATTCGGTGCCGATGTCTTGCTGCTTATGGTGATGCTGTTAGTGCAGTAAaatgGGCAAGTAGGCTTGGAAGAGAACACCACGATGATTTAGCACAATTTATGCTAGGAATGGGCTATGCTACCGAAGCACTTCATTTGCCTGGAATATCTAAGAGGTTGGAGTTTGATTTGGCAATGAAGAGCAATGATTTGAAAAGAGCTCTTCATTGTCTTCTTACCATGAGTAATAGCAGGGATATAGGAAATGATGGTACTCCTGGGCTTGGTTTGAATGACATTCTTAATTTATCTGataaaaaacaagataaattATCAGATAAAAAACAAGATATAGTTGAAGGTGTTCAGGGTATAGTGAAATTCGCAAAAGAGTTCTTGGAACTTATTGATGCTGCAGATGCTACAGCACAGAGTGAAATTGCCCGTGAGGCTCTCAAGAGGTTAGCTGCAGCAGGTTCAGTGAAAGGTGCTTTAGAAGGTCATGAATTGAGAGGATTAGCATTACGCCTTGCAAATCATGGAGAGTTGACTCGGCTAAGTAGTCTGGTTAACAACTTAATCACACTTGGCTTGGGACGGGAAGCTGCATTTGCTGGTGCTGTTTTGGGTGACAATGCTCTGATGGAGAAAGCATGGCAGGATACTGGAATGCTTGCAGAGGCTGTGTTGCATGCTCACGCACATGGACGTCCAACTTTGAAGAACTTAGTTCAGGCTTGGAACCAAGTGCTACAGAGAGAGATTGAACCTACTCCATCACAGAAGACAGATGCTGCAGCTGCATTTTTAGCTTCTCTTGAGGAGCCTAAGCTCACAAGTTTGGCAGATGCAGGGAAGAAACCGCCTATTGAAATCCTGCCTCCGGGGATGATGTCTCTTAATGCTCCTATTTCCATCCAGAAAAAACCAGCTTCTGCTGCACAGAATTCCCAACAGCCCCCAGGCAAGCCATTGGCACTGGAAGCACCTCCTACAACCACAGCTGCACCGGAGGGTGCTACACAGCAGCCTGAATCCACACCTGCATCAGTTAGTGATCCACTTCCGTCGGAGTCTACCTCAGACTCAACACCAGCTCCTGTGGCTGCTCCACCTCAACCAGAATCAGGTGAAACCACTGTAGATGATGGAGCTCCTACCTCTACGCCAGCAAGTGATGGAGATCCAAATGTTAATGGTGAAGCTGTTCAAGCAGCGTCTACGGGCAATCCAGCACCACCTGAGGTCCCCCCATCACCAGTAGCAGAGGTTTCAGAGACTACTGTTCCAAATCCAACTACAGTTCCAAGTCCAACTACAGTTCCTGCGAGTGACCCCCTTATATGA 4023 0.4544 MLRLKAFRPTTDKIVKIQLHPTHPWMVTADDSDRVSVWNWEHRQLVYELKAGGVDERRLVGAKLEKLAEGETESKGKPTEAIRGGSVKQVNFYDDDVRFWQLWHNRSAAAEAPTAVHTSSFSSPAPSTKGRHFLVICCLNKAIFLDLVTMRGRDVPKQELDNKSLLCMEFLYRTGVGDGPLVAFGASDGVIRVLSMMTWKLVRRYTGGHKGSISCLMSFMAASGEALLVSGASDGLLIIWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGAPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELTSVIPPQALAPNKKLRVYCMVAHTLQPHLVATGTNIGVIICEFDARSLPPVAPLPTPPDNREHSAIFVIERELKLLNFQLNNSANPSLGNNSSLSETGRPKGDFFEPLPVKQGKKHISTPVPHDSYSVLSVSSSGKYLAIVWPDIPYFSVYKASDWSIVDSGSARLLAWDTCRDRFAILESALPPRIPIIPKGSSSKRAKEAAAAQAAAAAAAAASTASVQVRILLDDGTSNILMRSVGARSEPVIGLHGGALLGVAYRTSRRVSPIAATAISTIQSMPLSGYGSSGLSSFTTYDDGFSSHRPPTEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQQYIVISSLRPQYRYLGDVAIPYATSAVWHRRQLFVATPTTIEIVFVDAGVAQIDIETRKMKEEQKMKEAQARAVVEHGELALITVEGPQSAKEERITLRPPMLQVVRLASFQHAPSVPPFLTLPKQSRVDGDDSWMVTEEKKAGEVAVGGGGVSVAVTRFPMEQKRPVGPLVVVGVRDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMKSNDLKRALHCLLTMSNSRDIGNDGTPGLGLNDILNLSDKKQDKLSDKKQDIVEGVQGIVKFAKEFLELIDAADATAQSEIAREALKRLAAAGSVKGALEGHELRGLALRLANHGELTRLSSLVNNLITLGLGREAAFAGAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNLVQAWNQVLQREIEPTPSQKTDAAAAFLASLEEPKLTSLADAGKKPPIEILPPGMMSLNAPISIQKKPASAAQNSQQPPGKPLALEAPPTTTAAPEGATQQPESTPASVSDPLPSESTSDSTPAPVAAPPQPESGETTVDDGAPTSTPASDGDPNVNGEAVQAASTGNPAPPEVPPSPVAEVSETTVPNPTTVPSPTTVPASDPLI 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0497 1340 Coils Coil 752 772 - -
Ssu4g0497 1340 MobiDBLite consensus disorder prediction 1199 1214 - -
Ssu4g0497 1340 SMART WD40_4 250 292 IPR001680 GO:0005515
Ssu4g0497 1340 SMART WD40_4 1 39 IPR001680 GO:0005515
Ssu4g0497 1340 SMART WD40_4 198 241 IPR001680 GO:0005515
Ssu4g0497 1340 Gene3D - 3 349 IPR015943 GO:0005515
Ssu4g0497 1340 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 301 IPR001680 GO:0005515
Ssu4g0497 1340 PANTHER TSET COMPLEX MEMBER TSTF 1 1188 - -
Ssu4g0497 1340 MobiDBLite consensus disorder prediction 1199 1340 - -
Ssu4g0497 1340 MobiDBLite consensus disorder prediction 1272 1298 - -
Ssu4g0497 1340 Gene3D - 903 1160 - -
Ssu4g0497 1340 PANTHER TSET COMPLEX MEMBER TSTF 1 1188 - -
Ssu4g0497 1340 SUPERFAMILY WD40 repeat-like 5 308 IPR036322 GO:0005515
Ssu4g0497 1340 MobiDBLite consensus disorder prediction 1227 1258 - -
Ssu4g0497 1340 MobiDBLite consensus disorder prediction 1316 1333 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0497 - - gmx:100786844 2402.86