Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0475 ATGGGGCAAAAGCATTTAGTGGTGGCTTTCTGTTTATGGGCCTTAACATGTTCCCTTCTTCCATCTTTCTCCTTTGGAATTCTGAGAATTGGTTTGAAGAAGAGACCTCTAGATCTTCAAAGTATTAATGCTGCTAGAAAGGCTAGAGAAGGTCTGCGATCTGGAAGACCAATGATGGGTGCACATGATCAGTTTGGTAAGTCAAAGGGTGAAGATATAGTACCTTTGAAGAATTATTTGGATGCTCAATATTTTGGTGAGATTGGAATTGGCACACCCCCACAACCCTTTACTGTCGTGTTTGATACTGGCAGTTCCAACCTTTGGGTTCCATCATCAAAGTGCTACTTTTCTCTTGCCTGCTATACCCATAATTGGTACAAGGCAAAGAAATCCAAAACATATGTCAAAAATGGAACATCTTGTAAAATAAGCTATGGATCTGGATCAATATCTGGTTTCTTCAGTCAAGATAATGTTAAAGTTGGCACTGCTGTTGTCAAGCATCAGGATTTCATTGAGGCCACCCGAGAAGGAAGTCTTTCCTTTCTGTCAGCAAAGTTCGATGGAATACTGGGACTTGGATTTCAGGAGATCTCAGTTGCAAATGCTGTGCCAGTATGGTACAACATGGTGGACCAAAaacatgttggtaagaaggtgTTCTCTTTTTGGCTTAATGGGGATCCAAATGCAAAAAAAGGTGGTGAAATAGTTTTTGGTGGTGTTGACCCAAAGCACTTCAAAGGGAACCACACTTATTTTCCAATTACCGAAAAAGGTTACTGGCAGatTGAAATGGGAGATTTTTTCATTGGAGGTGTTTCAACAGGTGTTTGTGAGGGTGGCTGTGCTGCTATTGTGGATTCGGGAACATCTTTGCTTGCTGGTCCAACTCCTGTTGTGGCTGAAATCAACCATGCTATTGGAGCTGAAGGAGTTCTCAGTGTAGAATGTAAGGAAGTCGTTTCTCAATATGGAGAGAGGATATGGGATCTCTTGGTATCAGGGGTAAGTTTTGAACTGAACATGATTTTCGGCTTGTGA 1047 0.4078 MGQKHLVVAFCLWALTCSLLPSFSFGILRIGLKKRPLDLQSINAARKAREGLRSGRPMMGAHDQFGKSKGEDIVPLKNYLDAQYFGEIGIGTPPQPFTVVFDTGSSNLWVPSSKCYFSLACYTHNWYKAKKSKTYVKNGTSCKISYGSGSISGFFSQDNVKVGTAVVKHQDFIEATREGSLSFLSAKFDGILGLGFQEISVANAVPVWYNMVDQKHVGKKVFSFWLNGDPNAKKGGEIVFGGVDPKHFKGNHTYFPITEKGYWQIEMGDFFIGGVSTGVCEGGCAAIVDSGTSLLAGPTPVVAEINHAIGAEGVLSVECKEVVSQYGERIWDLLVSGVSFELNMIFGL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0475 348 Pfam Eukaryotic aspartyl protease 83 317 IPR033121 -
Ssu4g0475 348 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 3 339 - -
Ssu4g0475 348 Pfam Saposin-like type B, region 2 318 338 IPR008138 -
Ssu4g0475 348 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190|GO:0006508
Ssu4g0475 348 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190|GO:0006508
Ssu4g0475 348 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190|GO:0006508
Ssu4g0475 348 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190|GO:0006508
Ssu4g0475 348 Gene3D Acid Proteases 243 313 IPR021109 -
Ssu4g0475 348 SUPERFAMILY Acid proteases 8 316 IPR021109 -
Ssu4g0475 348 Gene3D Acid Proteases 28 242 IPR021109 -
Ssu4g0475 348 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 3 339 IPR001461 GO:0004190|GO:0006508
Ssu4g0475 348 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Ssu4g0475 348 Gene3D - 314 339 - -
Ssu4g0475 348 ProSiteProfiles Peptidase family A1 domain profile. 84 348 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0475 Ssu-Chr4 7556276 7558203 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0475 K08245 - gmx:548009 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0475 4 7556276 7558203 Ssu7g1836 7 37050664 37054094 PCT