Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0465 ATGCTGTTCGGGAAGCGCGGAAAGAGTGGCTTAGTGGCTCTCAATTTGGACATGGCTCAAGTCGCGGAGTTCGTGAAAGCACGCCTCGGCGTTGAGGTTGAGATGGGTGGTTGCAAGGCGCCTATAACTACTTTCATTGTTGAACCCTTTGTTCCTCATGACCAAGAGTATTATCTCTCCATTGTTTCTGAAAGGCTCGGCTCGACCGTCAGCTTCTCCGAATGCGGGGGCATTGAAATTGAAGAGAATTGGGATAAGGTTAAAACTATATTCCTTCCCACGGAAAAACCTATGACTCCGGAGGCGTGTGCGCCGTTGATTGCTACACTACCTTTGGAGATTCGGGGGAAAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCCAAGATCTGGACTTCAGTTTTCTAGAGATGAATCCATTTACACTGGTGAATGAAAAACCATATCCACTGGATATGAGAGGGGAATTGGATGACACTGCTGCATTCAAGAACTTCAACAAGTGGGGTGATATAGAGTTTCCATTGCCTTTTGGAAGAGTTTTGAGCTCTACAGAAAGCTTCATTCATTCCTTGGAtgataagACAAGTGCATCATTGAAATTTACTGTATTGAATCCAAAAGGACGCATCTGGACAATGGTAGCAGGAGGTGGTGCAAGCGTAATTTATGCTGATACTGTTGGAGATTTAGGTTATGCATCAGAGCTTGGCAACTATGCTGAGTACAGTGGAGCTCCAAACGAGGAGGAGGTGTTGCAGTATGCAAGAGTTGTAATTGATTGTGCTACTGCAGACCCTGATGGCCGTAAGAGAGCCCTTCTTATTGGAGGTGGCATTGCAAACTTCACTGATGTTGCCGCCACATTCAGTGGGATTATTCGAGCCCTGAAAGAGAAGGAATCAAAGCTTAAAGCCGCGCGAATGCACATCTATGTCAGAAGAGGTGGTCCAAACTATCAGACTGGTTTGGCAAAGATGCGTGCATTGGGTGAGGAATTGGGAGTACCAATTCAGGTTTATGGGCCGGAGGCCACAATGACCGGTATCTGCAAACAAGCTATTGATTGCATCATGTCCGAAGCATAA 1092 0.4579 MLFGKRGKSGLVALNLDMAQVAEFVKARLGVEVEMGGCKAPITTFIVEPFVPHDQEYYLSIVSERLGSTVSFSECGGIEIEENWDKVKTIFLPTEKPMTPEACAPLIATLPLEIRGKIGDFIMGVFAVFQDLDFSFLEMNPFTLVNEKPYPLDMRGELDDTAAFKNFNKWGDIEFPLPFGRVLSSTESFIHSLDDKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIYVRRGGPNYQTGLAKMRALGEELGVPIQVYGPEATMTGICKQAIDCIMSEA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0465 363 PANTHER ATP-CITRATE SYNTHASE ALPHA CHAIN PROTEIN 3 1 363 - -
Ssu4g0465 363 SUPERFAMILY Succinyl-CoA synthetase domains 199 343 IPR016102 -
Ssu4g0465 363 Gene3D - 1 173 - -
Ssu4g0465 363 Pfam ATP citrate lyase citrate-binding 181 357 IPR032263 -
Ssu4g0465 363 Gene3D - 180 362 IPR016102 -
Ssu4g0465 363 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 2 176 - -
Ssu4g0465 363 PANTHER ATP-CITRATE SYNTHASE 1 363 - -
Ssu4g0465 363 Pfam ATP-grasp domain 2 143 IPR013650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0465 Ssu-Chr4 7459858 7463250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0465 1 360 Acyl Lipid Metabolism Gene Families AT1G09430 90.278 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0465 K01648 - gmx:100787551 702.59