Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0464 ATGGGGTTTCAAAACTTGGTATTGATAACTTTTATGATGACATTGGTTATTGTTCAATACGGGAATTGCAAGGTTACTCGTCATCCTCATTATCACTCATACAAAGACCTAGCCACCAAAATACTTCATAATATTGGTGGTGGTTTTGTTCAACGAAATGGCAcccatttttttctaaatgggAAGCCACACTACTTAAACGGATTCAATGCCTATTGGTTAATGAATATAGCATCTGACCCATCTACAAGTTCTAAGGTCACTACAACTTTTCAGGAAGCTTCCCAACATGGTCTGAACATAGCAAGAACTTGGGCATTCAACGATGGAGGTTACAAAGCCCTTCAGACTTCTCCTGGTTCTTATGACGAGAACGTCTTCAAGGCATTGGATTTTGTGATATCAGAAGCAGGAAAAAATGGGGTACGACTGATATTAAGCCTAGTAAATAACTGGAACAATTATGGTGGGAAGAATCAGTATGTTCAATGGGCAAGGGAACGTGGCCAGTATGTAAACAATGACGACGACTTCTTCACACATCCTGTTGTTAAGCAATActacaaaaatcatgtgaagACTGTGTTGATGAGAAATAACACTATAACTGGATTGGCATATAAGGACGACCCATCCATTTTTGCATGGGAGCTTATGAATGAACCTCGTTCTCAGAATGATTACTCTGGCAAATCAATTCAGgccttttttttGGAAATAGCTTCCTATGTGAAGTCCATTGATAGCAATCATTTGCTTGAAGTTGGGCTTGAAGGATTTTATGGGGAATCAATGCCAGAAAAGAAGCAGTTCAATCCTGGATACCAATTAGTACGAACTGATTTCATTTCTAACAATCAAGTTCCCAAAATTAATTTCGCCACCATCCATCTCTACCCTGATCAATGGGTATCGAGTTCTGATGAAACGGCCCAAGATGCCTTTGTTAACAAATGGGTCCAAGCCCATATCCAAGACTCAAATGATATTTTACGAAAGCCCATTCTTCTTACCGAGTTTGGAAAGTCTTCAAGGTCTTCGAGATACAACATGGATGAAAGAAATAGTTACTTTGAGAAACTATACAATTTCATATACAATAGTGCTAGAAATGGGGGCCCATGTGTAGGTGGGCTTTTTTGGCAACTAATGGCCCAAGGAATGGATGGCTTCCGTGATGGCTATGAAATCATCTTTCAAGAGAGTCCTTCAACTACCAATGTCATCACTCAACAATCTAAGAAGATGTCAAATCTTGAATAA 1263 0.3785 MGFQNLVLITFMMTLVIVQYGNCKVTRHPHYHSYKDLATKILHNIGGGFVQRNGTHFFLNGKPHYLNGFNAYWLMNIASDPSTSSKVTTTFQEASQHGLNIARTWAFNDGGYKALQTSPGSYDENVFKALDFVISEAGKNGVRLILSLVNNWNNYGGKNQYVQWARERGQYVNNDDDFFTHPVVKQYYKNHVKTVLMRNNTITGLAYKDDPSIFAWELMNEPRSQNDYSGKSIQAFFLEIASYVKSIDSNHLLEVGLEGFYGESMPEKKQFNPGYQLVRTDFISNNQVPKINFATIHLYPDQWVSSSDETAQDAFVNKWVQAHIQDSNDILRKPILLTEFGKSSRSSRYNMDERNSYFEKLYNFIYNSARNGGPCVGGLFWQLMAQGMDGFRDGYEIIFQESPSTTNVITQQSKKMSNLE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0464 420 Gene3D Glycosidases 47 420 - -
Ssu4g0464 420 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 1 9 419 - -
Ssu4g0464 420 PANTHER - 9 419 IPR045053 GO:0004553
Ssu4g0464 420 SUPERFAMILY (Trans)glycosidases 49 409 IPR017853 -
Ssu4g0464 420 Pfam Cellulase (glycosyl hydrolase family 5) 60 359 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0464 Ssu-Chr4 7441729 7445642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0464 47 417 Glycoside Hydrolase AT5G66460 57.143 6.18e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0464 K19355 - gmx:100791612 698.738