Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0458 ATGGGGTCTGAAGGTCCTACAACAccaataacaacaattcatgTGACAGGATTTAAGAAATTCCATGGAGTTTCAGAGAATCCAACAGAAACAATTGTCAATAATTTGACAGAGCACATGAATAAGAAGGGTTTGCCAAAGGGTTTAGCTATTGGGAGCTGCAGCATTCTTGAGACTGCAGGTCAAGGAGCACTTGTTCCACTGTACCAGAGATTACAATCCGCCATTATTGCCAAGGACTCTGAATCTTCAAATTCCAATAGAATTATTTGGgTGCATTTTGGGGTTAACAGCGGTGCTACAAGGTTTGCTATAGAGAACCAAGCTGTCAATGAGGCTAATTTTCGATGCCCTGATGAAATGGGATGGAAACCCCAGAAAGTCCCCATTGTTCCTTCGGATGGTGGCATTTCGCGAACACGGGAGACTTCACTTCCTGTTGAGGAGATCACCAAAGCCTTGGTAGAGAAGGGATATGAAGTTATGGTGTCGGATGATGCAGGAAGGTTTGTGTGCAATTACGTTTACTATCATTCCCTTCGCTTTGCCGAGCAGAATGGAATCAAATCCCTTTTCGTGCACGTGCCACTCTTCGTGACTATAAATGAAGAGACTCAAATGCAATTCGCTGCTTCCTTGTTAGAGGTGCTTGCCTCTATACCTTAG 666 0.4279 MGSEGPTTPITTIHVTGFKKFHGVSENPTETIVNNLTEHMNKKGLPKGLAIGSCSILETAGQGALVPLYQRLQSAIIAKDSESSNSNRIIWVHFGVNSGATRFAIENQAVNEANFRCPDEMGWKPQKVPIVPSDGGISRTRETSLPVEEITKALVEKGYEVMVSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFVTINEETQMQFAASLLEVLASIP 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0458 221 CDD Peptidase_C15 12 219 IPR000816 GO:0005829|GO:0006508|GO:0016920
Ssu4g0458 221 PIRSF Pyrrolidone-crbxlat_pptds 10 220 IPR000816 GO:0005829|GO:0006508|GO:0016920
Ssu4g0458 221 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 12 218 IPR036440 -
Ssu4g0458 221 Pfam Pyroglutamyl peptidase 13 198 IPR016125 -
Ssu4g0458 221 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 1 220 IPR016125 -
Ssu4g0458 221 PANTHER BNAA09G15240D PROTEIN 1 220 - -
Ssu4g0458 221 Gene3D - 10 220 IPR036440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0458 Ssu-Chr4 7411591 7413645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0458 K01304 - gmx:100789152 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0458 4 7411591 7413645 Ssu7g1822 7 36822083 36824276 PCT