Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0454 ATGGCTTGTGGCGGTGCATTCTCACCGAAGTTGCTACTCTTCGTGTTTTTATGGAAGCTCTCTTGTTTTCCAGCATTGGGTGGGTGCGGTAAGCCCGCGGCGCTGTTCGTGTTCGGCGATTCCAACTCGGACACGGGTGGACTCGCCGCCGGACTTGGTTTCCCTATCAATCTTCCCAATGGCCGCACTTTCTTTCGCAGATCCACTGGTCGCTTGTCCGATGGACGCCTCGTCATCGACCTACTCTGCCAAAGTTTGAATGCAAGTTTGTTGACACCATACTTGGACGCCTTGTCTGGAGGATTCACAAATGGAGCAAACTTTGCAGTGGTGGGGTCCTCTACTCTCCCAAAATATATTCCTTTCTCCCTAAATATACAGGTCATGCAGTTCCACCATTTCAAAGCTCGTTCCCTTGAACTTGTTACCGCAGGTGCAAGAAATTTGATCAATGAAGAAGGCTTCCGAAATGCACTCTACTTGATTGATATTGGGCAAAACGACCTTGCTGATTCATTTGCCAAAAATCTGTCATATGCGCAAGTCACCAAGAAGATCCCAGCATTTATAACTGAAATTGAGAATGCTGTTAAGAGTTTATATAATGAAGGTGCCAGGAAGTTTTGGGTTCACAATACTGGGCCGCTGGGCTGTCTTCCAAAAATACTTGCACTGGCTCAGAAGAAGGATCTAGATTCATTGGGATGTCTTTCTAGTTATAACTCTGCAGCAAGATTGTTTAATGAAGCGCTGTTTCATTTGAGTCAGAAACTAAGAACTGAACTGAAGGATGCTACTTTAGTCTATGTTGATATTTATGCCATTAAGAATGATCTCATCACAAATGCCGCGAAATATGGTTTCTCAAATCCGTTGATGGTATGTTGCGGCTATGGAGGGCCTCCTTACAATTTTGACGTAAGAGTGACATGTGGCCAACCTGGTTATCAGGTTTGTGCTGAAGGGTCTCGGTATGTGAGTTGGGATGGAATTCATTATACTGAGGCTGCAAATACATTCATAGCTTCTAAGATACTGTCCATGGCTTATTCCACACCACGGACACCTTTTGATTTCTTCTGCAAACACTGA 1092 0.4478 MACGGAFSPKLLLFVFLWKLSCFPALGGCGKPAALFVFGDSNSDTGGLAAGLGFPINLPNGRTFFRRSTGRLSDGRLVIDLLCQSLNASLLTPYLDALSGGFTNGANFAVVGSSTLPKYIPFSLNIQVMQFHHFKARSLELVTAGARNLINEEGFRNALYLIDIGQNDLADSFAKNLSYAQVTKKIPAFITEIENAVKSLYNEGARKFWVHNTGPLGCLPKILALAQKKDLDSLGCLSSYNSAARLFNEALFHLSQKLRTELKDATLVYVDIYAIKNDLITNAAKYGFSNPLMVCCGYGGPPYNFDVRVTCGQPGYQVCAEGSRYVSWDGIHYTEAANTFIASKILSMAYSTPRTPFDFFCKH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0454 363 Pfam GDSL-like Lipase/Acylhydrolase 35 345 IPR001087 GO:0016788
Ssu4g0454 363 Gene3D SGNH hydrolase 30 351 IPR036514 -
Ssu4g0454 363 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 12 362 - -
Ssu4g0454 363 SUPERFAMILY SGNH hydrolase 35 347 - -
Ssu4g0454 363 CDD SGNH_plant_lipase_like 34 347 IPR035669 -
Ssu4g0454 363 PANTHER OS01G0329900 PROTEIN 12 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0454 Ssu-Chr4 7376059 7380798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0454 34 352 Acyl Lipid Metabolism Gene Families AT4G10950 27.566 1.56e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0454 - - gmx:100797617 629.787