Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0445 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACTAGTTCTCCGGTGAGAAAGCGGCACAAGATTCGGAACTCGAAAGGCAAACGTGAGGGTGCAGCAGCATTCTCTGATGATGGAAGTGATTCCAGAGAGGAAGACTCTGATGAGGGTGCAAGCAAGAGGCGACAGAGGTATGCATCCCATGTTCCATTGAAGAAGAGGTTGGACCTCAGCAGAagaggtaataataataatagtattcgCAATGACCATGGTGGAGGTGACTTGGAGGATGGAGTTCCTGATAGGGATGGTGGCAGCAGCGAAGAATCTGATATTGGCAGTGATCTTTACAAGAACGAAGACGACAGGCAGAAGCTCACAAATATGACAGAACTTGAAAGAGAGATGATTTTGTCTGATAGAGCaactaaaaaatgtgaaaaggaattcaaagagaaaatgagaatgaagagggaaaacaaaaatgcaaatgCAAAGACTAGTTCTACACTGTCATCTCATCCATCATCTGCCAAGGTTCGTTCCTCAGCTAGACATGCTGAGAGGACGGCTTCCAAGGGAGATGTCCTAAGTGAATTGCGCGCGAAGAGAATGAAGCAACAAATCTTAGACCCTCATGATAAATTGGGAAACGCTTCAGGAACAGGCTCAAGTAGCAAGCAGAAGCCCGGAATCACAGCGAGTACAAGTAGCTCTAGTCAGAGTGAGAGTGCTATTCGGTCTGACAGTGAAAGAGACTCATCTGATGATGGTGGATTGGGTGACAGTGATGATGACAAGAACATGCATGAATCAGAGATGCCAACGTTTGAGGACGTACGGGAAATCACCATTAGGAGGTCAAAGCTTGTGAAGTGGTTGAACGAACCATTTTTTGAGGAGTTAATTGTTGGCTGTTTTGTGAGAATTGGCATAGGAAGGTCAGAGAGTGGACCTGTCTACAGGCTCTGCATAGTGCAGAGAGTTGATGGGGGTGCCCCAAATAAGCATTACAAGGTAGAGAATAGAGTCACTCACAAGTATCTAGTTTGTGTGTGGGGCAGTGAGAACTCTGCTAAAAAGTTTCAGGTGGCTGTGGTTTCAGATTCTGCACCATTGGAGAAAGAGTTCAGACAGTGGGTTAGAGAAGTTGAGAGAACTTGCAGCCAGATGCCAACTAAGATGAGTGTGTTGGAGAAGAAGGAGGCCATAAGAAGAACTAGCATGTACGTTTATTCGGCTGCCACTGTGAAGCAGATGCTAGAGGAGAAAAAATCAGCCCCATCTAGGCCACTGAACATTGCGGTGGAGAAGGATCGTTTGAAGAATCTGTTGGAGGTAGCAAAAAGTAAGAATGATGAGGCAGAGATGGATAGGATCTATGCAAAGCTCGCGGAATTGGAAGCATGTCGGAAAACCCGGCAAAACGATGCCAAGGCTATGAGGCTGGCTGAGATGAACAGGAAGAACAAGGTTGAGAACTTCAAGAACCTGTCTGAACATAAACAGTTGAATGCAAATTTGAAGGCCGGAGAGGAAGGCTATGATCCCTTTTCGAGGAGGTGGACAAGGTCGAGGAATTACTATGGGAAAGAAActgagaagaaagaaggtaaagGAGAAAGGGACGGTGAAGTTAGTAAggaggaagaaaaaggagaagaaggtgTTACAACAAAGGTTGGTGTTGAAGTCACAGAATTGGCATTGCAAGCAGCTGCTGATGCAGGGAAGTTGATTGATACCAATGCTCCTGTGGATGGTGGAACAGAATCAAATATGCTGCATGATTTTGACTTGCCTATTTCTTTGGTTGAACTCAAGAGTTTTGGTGGACCACAGGGACTCAAAAATGGGTTTCTGTCaaggaaacaaaaaatagaagcaACAGTTGGGTGCCGGGTTTCTGAGAATGATGGGAGTAGGCATGCTCTCACATTAACTATCAGTGACtacaaaagaagaagaggacTTCTGTGA 1971 0.4201 MADLENMLLEAAGRTSSPVRKRHKIRNSKGKREGAAAFSDDGSDSREEDSDEGASKRRQRYASHVPLKKRLDLSRRGNNNNSIRNDHGGGDLEDGVPDRDGGSSEESDIGSDLYKNEDDRQKLTNMTELEREMILSDRATKKCEKEFKEKMRMKRENKNANAKTSSTLSSHPSSAKVRSSARHAERTASKGDVLSELRAKRMKQQILDPHDKLGNASGTGSSSKQKPGITASTSSSSQSESAIRSDSERDSSDDGGLGDSDDDKNMHESEMPTFEDVREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGRSESGPVYRLCIVQRVDGGAPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEKEFRQWVREVERTCSQMPTKMSVLEKKEAIRRTSMYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLEVAKSKNDEAEMDRIYAKLAELEACRKTRQNDAKAMRLAEMNRKNKVENFKNLSEHKQLNANLKAGEEGYDPFSRRWTRSRNYYGKETEKKEGKGERDGEVSKEEEKGEEGVTTKVGVEVTELALQAAADAGKLIDTNAPVDGGTESNMLHDFDLPISLVELKSFGGPQGLKNGFLSRKQKIEATVGCRVSENDGSRHALTLTISDYKRRRGLL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0445 656 Coils Coil 435 455 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 87 159 - -
Ssu4g0445 656 PANTHER UNCHARACTERIZED 1 656 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 528 555 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 215 242 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 1 272 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 243 272 - -
Ssu4g0445 656 Gene3D - 271 404 IPR036128 GO:0003677
Ssu4g0445 656 MobiDBLite consensus disorder prediction 178 208 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 30 75 - -
Ssu4g0445 656 Coils Coil 143 163 - -
Ssu4g0445 656 MobiDBLite consensus disorder prediction 528 556 - -
Ssu4g0445 656 SUPERFAMILY Plus3-like 273 402 IPR036128 GO:0003677
Ssu4g0445 656 MobiDBLite consensus disorder prediction 160 177 - -
Ssu4g0445 656 SMART rtf1 271 383 IPR004343 GO:0003677
Ssu4g0445 656 Pfam Plus-3 domain 276 381 IPR004343 GO:0003677
Ssu4g0445 656 PANTHER PLUS-3 DOMAIN PROTEIN 1 656 - -
Ssu4g0445 656 ProSiteProfiles Plus3 domain profile. 271 406 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0445 Ssu-Chr4 7301415 7303385 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0445 K15178 - gmx:100793188 954.51