Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0443 ATGAGGAAGAAATACTATAAGAGAGGAACTGGCGCGGACCAGAGTCGGAGAAGGAGGGAAGACAACCTCGTTGAAATCAGAAAGAACAAACCCGAAGAGACTCTCCTCAAGAAACGAAGAGAATCTTATGCTGGCCTTTCCCACCATAAGCTGTTGGAAACTATTCCTGCGATGGCACAACGTCTATGGTCTGACAACCCTGCCACACAATTGGAGGCAACTGCTCACTTTAGACATATGTTAGCAATTGTTGGCAACCCTCCAATTGATAAGGTGATTAAGGCAGGTGTTGTCCTTCGCTTTGCGGAGTTCTTGGCAAGCCATGATGCACCCCAATTGCAGCTTGAGGCTGTATGGGCTTTAACCAATACTGCTTCCGGAACATCCAAACACACAACACTTATCATTGAACTTGGTCTTGTTCCCTTGTCGATCAAACTTCTCAACTCTAGCGACAGTGATGTCAGAGATCAGGTAAGGTTTGCCTTGCCTGTCCTTAGGATACTCATCCAATTTGTCAAGGATGAAGAAGTTCTAACAAATGAATGCTGGGCTCTCTATCACCTTTCGCATGGCCCAATTGACAATATTCAACCCATTATTAATACAGCAGTTTGCCCAAAACTTATGGAGCTTCTGCTGCATCCATCAGATATAGTTATTGTACCTGCGCTTCGGACTCTAGCAAATATTGCTTTTGGTAATGATGCTCAGACTCCGGTAGAAACAACAACGTATTATTATCTTCTGATTCTTGTGAAAGCATGTTTGccatga 777 0.4363 MRKKYYKRGTGADQSRRRREDNLVEIRKNKPEETLLKKRRESYAGLSHHKLLETIPAMAQRLWSDNPATQLEATAHFRHMLAIVGNPPIDKVIKAGVVLRFAEFLASHDAPQLQLEAVWALTNTASGTSKHTTLIIELGLVPLSIKLLNSSDSDVRDQVRFALPVLRILIQFVKDEEVLTNECWALYHLSHGPIDNIQPIINTAVCPKLMELLLHPSDIVIVPALRTLANIAFGNDAQTPVETTTYYYLLILVKACLP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0443 258 PANTHER IMPORTIN SUBUNIT ALPHA-4 2 163 - -
Ssu4g0443 258 PANTHER IMPORTIN SUBUNIT ALPHA-4 158 241 - -
Ssu4g0443 258 SMART arm_5 85 126 IPR000225 GO:0005515
Ssu4g0443 258 SMART arm_5 193 233 IPR000225 GO:0005515
Ssu4g0443 258 SMART arm_5 128 191 IPR000225 GO:0005515
Ssu4g0443 258 Pfam Armadillo/beta-catenin-like repeat 86 125 IPR000225 GO:0005515
Ssu4g0443 258 PANTHER IMPORTIN ALPHA 2 163 - -
Ssu4g0443 258 PANTHER IMPORTIN ALPHA 158 241 - -
Ssu4g0443 258 Gene3D - 1 41 IPR036975 GO:0006606
Ssu4g0443 258 Gene3D - 161 254 IPR011989 -
Ssu4g0443 258 MobiDBLite consensus disorder prediction 7 23 - -
Ssu4g0443 258 Pfam Importin beta binding domain 2 74 IPR002652 GO:0006606|GO:0061608
Ssu4g0443 258 MobiDBLite consensus disorder prediction 1 23 - -
Ssu4g0443 258 Gene3D - 52 160 IPR011989 -
Ssu4g0443 258 ProSiteProfiles IBB domain profile. 1 48 IPR002652 GO:0006606|GO:0061608
Ssu4g0443 258 SUPERFAMILY ARM repeat 4 239 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0443 Ssu-Chr4 7261203 7264684 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0443 K15042 - rcu:8269839 243.817