Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0441 ATGGCCATGGCATTTGAAACGAGTCGCTTTTATCTATCGCGCCCAACTTCCTCAACACACTTCTTATTTTCCTCCAGTCTCACACTACCGAAACCTGTTTCGCTTCCATCTCGACTCTTCCATTGCCGATCGAAACGCCTCATTTTGACGCCGAGATTCGCGGTGAGAGCCTGCGCGGTGAACGTTGAGGAGAAGGATGTCGCCGGAAAATCGGGAGAGTGGGGGAAGGTTTCTGCAGTGTTGTTCGACATGGACGGCGTGCTCTGCAACAGCGAAGAACCTTCTAGAAGAGCCGCCGTCGACGTGTTCGCCGAGATGGGCGTCGAAGTCACCGTCGACGATTTTGTGCCGTTCATGGGAACTGGAGAAGCAAACTTTTTGGGAGGTGTTGCTTCTGTTAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCAAAAAAAAGGttctttgaaatatatttagataagTATGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCCTTGAACTCATTTCTCAGTGTAAAAGCAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTATAAAGGTTGATGCAAATCTAGCTGCTGCTGGTTTACCATTGTCAATGTTCGATGCGATTGTGTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCGTCAAGAATATTGAATGTGCCCCCCAGTGAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTTCAAGCTGCCAAAGCTGCTCAAATGAGATGCATAGCTGTAAGGACCACATTATCAGATGAGGCTTTGGAATCTGCCGGCCCAACACTTATCCGAGATGACATAGGAAGTGTTTCACTTGATGATATTCTCAGTGGTGGCTCTGTTGGATATAATAAGAGGATGCAGGGCTCTGAAACACTAAATAATTTTGCAGAGTCTTCATCTGCTGTGCTTGCTGGACGGTTGCAGGGTTCTCGGCGTGATATACTGAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTTTTCTTCACCTTAAGTAACTGGAAGGTAATGCAATATGCTTCCCCTAAAGCAGTTTGGAATCAGTTGATTGGTGTTACCCAGCCACCCTTGGAGCAGAAAGAAGATAGCTCAAGATATAATAGGATCCAGCAATTTGTGGACTACATATCTGATATGGAAAGCAGGGGAAATGCTCAGATTGTTCCAGAATTTCCGTCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTACTGCTGGATTTCTGGACCTATTGTTGTATAAACTGTATGCATGTGTTGCCAGACCTAGAtgttttggagaaaaaatacaaagatatgCCGTTCGTTGTTGTGGGTGTTCATTCTGCAAAGTTTGATAATGAAAAAGATTCTGAAGCCATTCGCAATGCAGTTCTACGCTATGGCATTTCTCACCCGGTTGTCAATGATGGAGACATGTATCTTTGGCGGAAATTGGGTATAAATTCATGGCCAACAATTGCTATTGTTGGCCCCAGTGGTAAGCTTCTTGCACAACTTGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCTGCACttctattttatggaaaaaaaaacatgttggACAATACGCCAATTTCATTGAGTTTGGAGAAAGATAATGATCCACGCCTATCCACATCTCCATTAAAGTTTCCTGGAAAGCTAGCAATTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCACAACCGCATAGTGGTTACTGACCTTGATGGGaattttattgtacaaattgggAGCAGCGGGGAGGAAGGTTTGCTGGATGGTTCCTTTGATGGTGCTACTTTTAACCGCCCTCagGGCCTTGCTTATAATGCAAAGAAAAATATCCTGTATGTTGCAGACACCGAAAACCATGCTTTAAGGGAAATTGATTTTGCTAATGAGAGAGTGCGGACTCTTGCCGGAAATGGGACCAAGGGAAATGATTATGTTGGAGGTGGAAAAGGAGACACTCAGCTCCTCAATTCTCCTTGGGATGTCTGCTTTCATccatttgaagaaaaaatttatattgccATAGCTGGCCAACATCAGATTTGGGAGCACAATTTATTGGATGCAACTACGAGAGCATTTAGTGGTGatggttttgaaagaaatttaaatggaTCAAGTTCTACAAGCACATCATTTGCACAACCTTCTGGTCTTTCATTGTCTCAAGATCTAAGGGAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTATTGATCTGCGAACAGGAGGATCTCGGTTGTTAGCTGGTGGTGACCCAATCTTCCCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATAGGCTCTGAGGTACTTCTTCAACATCCATTGGGGGTTATGTGCGGAAATGATGGTGAAATTTATGTCGCAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAGCTAGTAAAAGAGTTAGCACCATTGCAGGGACTGGAAAAGCTGGTTTCAAAGATGGAACAGCTTTAAAAGCTCAGCTCTCTGAACCGTCAGGAATTGTCGAAGGGAACAAGGGGAGGTTATTCATAGCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACACTGATGAAACTGAACTCCGAACATTGGAGCTTAAAGGAATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGACGACGACCATCAGCTGACACAATGCCAATTACCATTGATGCCATTTCATCAAATGAGGGAAACTTGtctattaaaatatcattaccAAATGAGTATCATTTCTCCAAGGAAGCACGCAGTAGATTCAGTGTTGATATTGAACCTGAAGATGCTGTGAATATTGATCCCCTTGATGGATTCCTTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAATGGGAAGAATTAATTGCAAGGTTTACTATTGCAAGGAAGATGAAGTTTGTCTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCGAGAGGGAGCTTCTAACCCTGCCAAAGCAGACGTCACTCTTGCACATTTTGTGAAACCCAAAACTTCAACCAGCAACTTACTGCAGCCAGTTGGCTCGTGA 3198 0.4168 MAMAFETSRFYLSRPTSSTHFLFSSSLTLPKPVSLPSRLFHCRSKRLILTPRFAVRACAVNVEEKDVAGKSGEWGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVDDFVPFMGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKYAKPDSGIGFPGALELISQCKSKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAASRILNVPPSECIVIEDALAGVQAAKAAQMRCIAVRTTLSDEALESAGPTLIRDDIGSVSLDDILSGGSVGYNKRMQGSETLNNFAESSSAVLAGRLQGSRRDILRFGSLGIAISCLFFTLSNWKVMQYASPKAVWNQLIGVTQPPLEQKEDSSRYNRIQQFVDYISDMESRGNAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDVLEKKYKDMPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMYLWRKLGINSWPTIAIVGPSGKLLAQLAGEGHKKDLDDFVEAALLFYGKKNMLDNTPISLSLEKDNDPRLSTSPLKFPGKLAIDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLLDGSFDGATFNRPQGLAYNAKKNILYVADTENHALREIDFANERVRTLAGNGTKGNDYVGGGKGDTQLLNSPWDVCFHPFEEKIYIAIAGQHQIWEHNLLDATTRAFSGDGFERNLNGSSSTSTSFAQPSGLSLSQDLREIYIADSESSSIRAIDLRTGGSRLLAGGDPIFPDNLFKFGDQDGIGSEVLLQHPLGVMCGNDGEIYVADSYNHKIKKLDPASKRVSTIAGTGKAGFKDGTALKAQLSEPSGIVEGNKGRLFIADTNNSLIRYLDLNTDETELRTLELKGIQPPKPKSRSFKRLRRRPSADTMPITIDAISSNEGNLSIKISLPNEYHFSKEARSRFSVDIEPEDAVNIDPLDGFLSPEGSATLHFKRSSNSASMGRINCKVYYCKEDEVCLYQSLLFEVPFREGASNPAKADVTLAHFVKPKTSTSNLLQPVGS 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0441 1065 Pfam NHL repeat 632 657 IPR001258 GO:0005515
Ssu4g0441 1065 Pfam NHL repeat 812 838 IPR001258 GO:0005515
Ssu4g0441 1065 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 76 285 - -
Ssu4g0441 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 175 188 IPR006439 -
Ssu4g0441 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 77 88 IPR006439 -
Ssu4g0441 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 207 223 IPR006439 -
Ssu4g0441 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 225 245 IPR006439 -
Ssu4g0441 1065 Gene3D - 79 277 IPR023214 -
Ssu4g0441 1065 Pfam Thioredoxin-like 429 523 IPR012336 -
Ssu4g0441 1065 Pfam Haloacid dehalogenase-like hydrolase 80 263 IPR041492 -
Ssu4g0441 1065 Gene3D - 550 718 IPR011042 -
Ssu4g0441 1065 Gene3D - 795 894 IPR011042 -
Ssu4g0441 1065 SUPERFAMILY Thioredoxin-like 404 542 IPR036249 -
Ssu4g0441 1065 SFLD Haloacid Dehalogenase 76 285 - -
Ssu4g0441 1065 SUPERFAMILY HAD-like 77 286 IPR036412 -
Ssu4g0441 1065 Gene3D Putative phosphatase; domain 2 90 161 IPR023198 -
Ssu4g0441 1065 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 205 263 IPR006439 -
Ssu4g0441 1065 ProSiteProfiles Thioredoxin domain profile. 366 546 IPR013766 -
Ssu4g0441 1065 SUPERFAMILY NHL repeat 573 899 - -
Ssu4g0441 1065 CDD NHL-2_like 614 955 IPR045302 -
Ssu4g0441 1065 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 183 1059 - -
Ssu4g0441 1065 Gene3D Glutaredoxin 381 547 - -
Ssu4g0441 1065 CDD HAD_BPGM-like 79 265 - -
Ssu4g0441 1065 ProSiteProfiles NHL repeat profile. 812 842 IPR001258 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0441 Ssu-Chr4 7212484 7233755 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0441 - - gmx:100795843 1965.27