Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0434 ATGTCCTGTTTCCTACGAAAATCCCTTAGGACTCAGGGGTTGTCCCTGTTTCTGCACAAACTCGTGGAGAACTCGTCTGAGTCGCTTAACATTCTTCTGCCTTCATCAAGCTGGTTTTGGTGTCGCCACTTGTCACATTCCCTTCCCCATAATACCAGTCCCCGGTTCGCTTCGAATTCGGTCCCAAGTGCCAGCCACGCTAATGCGTCTCTCCAAATTCGCTTCTGGGCCTCTGAGGCCGCCGCCGCCACTGAACCCTCAACCTCTGATGGCCTCACGGTCCAAGGAATTCTGGCCTACAATTGGACCATTCTGGACGAAAACGACAGCGATTGGAAGAGTCATGCCACCGCCATAGCTCAATCTATTCACTTGATCAAACGCCGGTTACAGTGGGGAAAATTGAAGGTGAGGTTGGATATGTTATCGTTCCGGCTGAATAAGGCAGACCTTTGGGATGATCCGGTGCAAGCGGGTAAAATAAGCCGAGAGCATGGTTCTCTCCTGGGAAAAATGAAAGAGGTAAATGCATTGGAGCAAGAGTTACTTGAGCATATTGACATGATAAAGCTTGCGCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCATTGAAAGCGCTGCTAAACATGAGAAGAAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTGCTGGGGAGCAAGATTCCTGTTCTTGCTACATTGAGgtTCAAGCTGGGGCTGGGGGCACTGAGAGCATGGACTGGGCTGCAATGGTCATGCAGATGTATAAGTCATGGGCACAACGATGTGGATATAAAGTAACTGTAATGGATGAAATGCCTGGTGAGATTGCAGGAATCAAGcgaGCTACCATCAAAGTAGATGGTGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTGGTGCGCATATCACCTTTTGACAGTAATAAGCGCCGGCATACTTCATTTGCCGCCGTGGCAGTGATTCCAATCCTTGGTGATGGATCTACCCATGTACAAATTAATGAATCTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACAACTGAGAGTGCTGTAAGAATAGTTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAACGAAAGATCACAGCATCAGAATAAGGCTTCAGCAATGGCTGTGCTTCAGTCTAGATTAGACCAGCTGGAGATGGCACGCCAGGCACAGTTGAATGTGCAGCATACACAATCTCTCACTGACATAACATGGGGCAGTCAGATTCGTAGTTATGTTCTCCATCCTTACCGAATGGTGAAAGATCTTAGAACCAATTATGAGGTTTCAGATCCGGACTCTGTCCTTGAGGGAGATCTAGACGGTTTCATCTTGAGCTATCTATCAGCTTCTTTGGATAAAGATGATGAtgcttaa 1437 0.4669 MSCFLRKSLRTQGLSLFLHKLVENSSESLNILLPSSSWFWCRHLSHSLPHNTSPRFASNSVPSASHANASLQIRFWASEAAAATEPSTSDGLTVQGILAYNWTILDENDSDWKSHATAIAQSIHLIKRRLQWGKLKVRLDMLSFRLNKADLWDDPVQAGKISREHGSLLGKMKEVNALEQELLEHIDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLAGEQDSCSCYIEVQAGAGGTESMDWAAMVMQMYKSWAQRCGYKVTVMDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSNKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERFRAGGAGGQHVNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEMARQAQLNVQHTQSLTDITWGSQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSASLDKDDDA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0434 478 TIGRFAM prfB: peptide chain release factor 2 112 470 IPR004374 GO:0005737|GO:0006415|GO:0016149
Ssu4g0434 478 Pfam RF-1 domain 337 444 IPR000352 GO:0003747|GO:0006415
Ssu4g0434 478 Coils Coil 175 195 - -
Ssu4g0434 478 Gene3D - 235 464 - -
Ssu4g0434 478 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 79 476 - -
Ssu4g0434 478 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 79 476 - -
Ssu4g0434 478 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 351 367 IPR000352 GO:0003747|GO:0006415
Ssu4g0434 478 Gene3D Release factor 110 221 - -
Ssu4g0434 478 Pfam PCRF domain 137 325 IPR005139 GO:0006415
Ssu4g0434 478 Gene3D - 331 427 - -
Ssu4g0434 478 SMART PCRF_a_2 190 300 IPR005139 GO:0006415
Ssu4g0434 478 Hamap Peptide chain release factor 2 [prfB]. 108 472 IPR004374 GO:0005737|GO:0006415|GO:0016149
Ssu4g0434 478 SUPERFAMILY Release factor 136 471 IPR045853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0434 Ssu-Chr4 7074355 7077194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0434 K02836 - gmx:100797427 792.341