Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0148 ATGTACACTAATGAGAGCTGCCGTGTGATTGAAGATCATCAAAACTGCATGAGGAATGGACGGCCTGATTCGGGGTACCTTTATTGGAGATGGAACCCAAGAGGATGTGAATTACCCAAGTTCAGTCCAAAGAAATTCCTTGACATTATGAGGGATAAATCATGGGCCTTTATTGGTGATTCCATCTCTCGCAACCATGTGCAATCGCTACTTTGCATTCTCTCACAGGTGGAAGCAGCTGATGAGGTATACCATGATGAGGAATATAGATCAAAGATATGGAAGTTCCTCTCTCACAGCTTCACCCTCTCAGTAATATGGACCCCTTTCCTTATCAAAGCAGATATATTTGAGAACATGAATGGAGTTTCCTCTTCAGAAATACAGCTTTATCTTGACATTCTAGACGATAAATGGACCAACCAATATAGGAATTTTGACTATGTTGTAATCGCAGGTGGCAAATGGTTTCTCAAGACAGCAATATACCATGAAGACAACACGGTTACAGGATGCCACAACTGCCATGGAACGAATTTAACAGACATAGGATTCGAATACGCATACCGCAAAGCGCTGCAGCAGGTTTTTGAGTTCATAACAAACTCACAGCACAAAGCGGTTGTGTTCTTCAGAACCACCACACCGGACCACTTTGAGAATGGGGAGTGGTTCAGTGGAGGGTACTGCAATAGGACAGTGCCCTTCAAAGAGGACCAGATAGATGTGAGGGATGTGGATTCCATCATGAGAGGCATTGAAATTGAAGAGTTTCACAAGGCTAAGGCTGAGGTTGCAGGCGCCAACTTGAAACTTTTGGACACAACTGGGATCTCACTGTTGAGACCTGATGGGCATCCAGGCCCATACCGTCAGTTCCACCCTTTGCCCAATGCTAAAGTCCAGAATGATTGTCTGCATTGGTGTCTGCCTGGCCCAATTGACTCCTGGAATGATATAGTTTTGCAAATGCTGTCAATGTGA 984 0.4441 MYTNESCRVIEDHQNCMRNGRPDSGYLYWRWNPRGCELPKFSPKKFLDIMRDKSWAFIGDSISRNHVQSLLCILSQVEAADEVYHDEEYRSKIWKFLSHSFTLSVIWTPFLIKADIFENMNGVSSSEIQLYLDILDDKWTNQYRNFDYVVIAGGKWFLKTAIYHEDNTVTGCHNCHGTNLTDIGFEYAYRKALQQVFEFITNSQHKAVVFFRTTTPDHFENGEWFSGGYCNRTVPFKEDQIDVRDVDSIMRGIEIEEFHKAKAEVAGANLKLLDTTGISLLRPDGHPGPYRQFHPLPNAKVQNDCLHWCLPGPIDSWNDIVLQMLSM 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0148 327 Pfam PMR5 N terminal Domain 1 37 IPR025846 -
Ssu4g0148 327 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 38 324 IPR026057 GO:0016740
Ssu4g0148 327 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 2 325 IPR029962 GO:0016413
Ssu4g0148 327 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 26 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0148 Ssu-Chr4 2498725 2500720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0148 - - gmx:100795653 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0148 4 2498725 2500720 Ssu4g0148 4 2498725 2500720 ECH
Ssu4g0148 4 2498725 2500720 Ssu4g2919 4 74533484 74537011 PCT