Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3349 atggcGAAATCGGGGAATAAGAATATGGGATCAACGTCTGCGTCCGCAAAAGTTCACCCTTCCAATGATCCTGAACTGGATCCCGACTCTTACGCCCTCGAGAAGTTCAGACTCTACGAAACCAGAgcgAGGTTTTACCTGATCGGGAGTGATCGTAACAAGAGGTTCTTCCGTGTGTTGAAAATTGATCGATCAGAGCCGTCGGATCTGAATATCAGCCAAGACCCTGTGCTGTATTCGCCCCAGGAAATCAAGAGCTTGCTTCAGCGGATTGATGAAGGTAACAGGGCCACTGGCGGCCTCACTTTCGTCGCTAAGGTTTTCGGGATTGCCGGCTGTATCAAGTTTCTCGAGTCCTACTATTTGATTCTCGTTACTAAGCGCAGGCAAATTGGTTCTATTTGTGGCCATGCAATCTATAGCATCAAGGAGAGCCAATTGATAACCATTCCACATGTTTCAATTCAATCGGATTTAGCTCACTCTAAGACTGAGCTCAGGTACAAAAAGCTCCTGTCTAGTGTCGATTTGACCAAGGATTTTTTCTTTAGTTACACTTACCCTATAATGCAAAGTTTGCAAAAGAACGTCTCGGCCAATCAAGAGGGAGGGATGccatatgataatatatttgtttggaATGCGTATTTGACGCAAACAATCAGATCAAGATGCAATAAAACCATTTGGACCATAGCTTTAGTTCATGGTCATTTTAGGCAGATTCGTCTATCAATTTTTGGAAGGGACTTCAGTGTTTCCTTGATTTCTAGACGATCAAGACATTTTGCAGGGACACGTTACTTGAAAAGGGGAGTGAATGATCGGGGGAGGGTTGCTAATGATGTTGAGACAGAGCAGATTGTCCTTGATGAAGAAGCTGGCTCTTGCAAGGGCAAAATGAGTTCAGTTGTGCAAATGCGTGGATCAATACCACTTTTCTGGTCACAAGAAGCATCAAGATTTAGCCCTAAGCCTGACATAATTTTGCAGAGGTATGATCCGACATACCAGGCAACAAAATTGCATTTTGAAGACCTTGCTAAGAGATATGGCAATCCAATTATTGTTCTTAATTTGATTAAGACAGTTGAGAAACGGCCTCGAGAAATGATGCTGAGGCGTGAATTTGCAAATGCTGTTGGGTATCTGAACCAAATTCTACCGGTAGAGAACCATCTTAGATTTATTCACTGGGACTTTCACAAGTTTGCAAAGAGCAAGTCTGCCAATGTTTTGGCAGTTTTAGGAGCTGTAGCAAGTGAAGCGCTTGATTTAACTGGTTTTTACTACAGTGGTAAACCAAGTATCATAAAGAAGGCCAACAAGAGCAATCGAACAAGCACAGGGAGGGATACTTCACTGAGAGATCTGAGAGCTAGTTCTGGGGATCTTGTGAGGATTGGGAACAGTAATGAAATGCTAAATTCTGTGGTTAATCGAGACAGAGAGACTGACATGAACCatcagaataaaaaagataattttagtaGTGACGCACCACATTTTCAGAGTGGAGTTCTCCGTACCAACTGCATTGACTGCTTGGATCGTACAAATGTTGCCCAGTATGCATATGGTCTTCAAGCTTTAGGACGCCAGCTTCATGCAATGGGTTTGACTGATGTGCCAAAAGTGGATTTTGATAGTAGTATTGCTGCAGCTCTGATGGATATGTATCAAAGTATGGGTGATGCTCTTGCCCAGCAGTATGGTGGTTCTGCAGCTCACAATACTGTGTTTCCAGAGAGGCAGGGAAAGTGGAAAGCAACAACACAATcaagagaatttttaaaatccatAAAACGATACTATAGCAATGCTTACACAGATGGTGAAAAACAAGATGCAATAAACTTATTTTTAGGTTACTTCCAACCACAGGAAGGGAAACCTGCTCTCTGGGAGCTGGATTCAGATTATTATCTCCATGTATCTGGGATTGGGGATGATCTAATTCCTGAGAAGTGTTCTGAACTGAATCTCAAGCCTTCTGGAAGAGGTGGAATGGTGTTCATCCCTATACCAGCTTGCAGAGAAGACTTCTCACGCATAAAGTTGACATCATTTGACAAGTTAATTGAAAAGACCTGTAGTACAATTAAAAATGTAAGACTATGCCGTGAACCTGATCAGAGACCAGGTGGGGGTACTGGAAACAGTGGTGTAGCACCTGATGCAGCTGAGATACAGCTCAAAAGTCCAAATTGGCTTTTCGGCCAGAGAAAGTATGAAGAGGGTTCCTCTGCTGCAAAAGTTGCTTCTCGTGAAACTGATGTTGAAGGACCTCATGTTAATGGCTTTTGTGACTTGAATTGGCTTTCCTCTGGCAATGATATGAATGAAGAGGATGTTTTCCAAAGGTACCTTACAATGACCTCAGCAAACGAGACCAACGGTTGGTATGGAGGTAGTCTCCTTGGCGATCAAGATGAAAGCAGTGagatatataaacattatgcTGAGTTATGTCAGGGACCTGCCTTGGAACTTTTCCAAAATGACCCTGAGAGGGAGCAACACTACGCAGATGCTTTAAGCATGAGTTCTTATGAAATTGTTAATGATGCTGCCGTTGCAGCAGAAATGGAAGCAGCTCTAAAGGAGTATGACCAAGTTGGTGCTGACCTTGGGATCATTCCCACATCTTGTAAATTCTTTGCTGATGATCCCAGCTGGCTGACGAGATGGTTAACTGGGGAAGAAAAAGTACCAGGGATATGA 2724 0.4192 MAKSGNKNMGSTSASAKVHPSNDPELDPDSYALEKFRLYETRARFYLIGSDRNKRFFRVLKIDRSEPSDLNISQDPVLYSPQEIKSLLQRIDEGNRATGGLTFVAKVFGIAGCIKFLESYYLILVTKRRQIGSICGHAIYSIKESQLITIPHVSIQSDLAHSKTELRYKKLLSSVDLTKDFFFSYTYPIMQSLQKNVSANQEGGMPYDNIFVWNAYLTQTIRSRCNKTIWTIALVHGHFRQIRLSIFGRDFSVSLISRRSRHFAGTRYLKRGVNDRGRVANDVETEQIVLDEEAGSCKGKMSSVVQMRGSIPLFWSQEASRFSPKPDIILQRYDPTYQATKLHFEDLAKRYGNPIIVLNLIKTVEKRPREMMLRREFANAVGYLNQILPVENHLRFIHWDFHKFAKSKSANVLAVLGAVASEALDLTGFYYSGKPSIIKKANKSNRTSTGRDTSLRDLRASSGDLVRIGNSNEMLNSVVNRDRETDMNHQNKKDNFSSDAPHFQSGVLRTNCIDCLDRTNVAQYAYGLQALGRQLHAMGLTDVPKVDFDSSIAAALMDMYQSMGDALAQQYGGSAAHNTVFPERQGKWKATTQSREFLKSIKRYYSNAYTDGEKQDAINLFLGYFQPQEGKPALWELDSDYYLHVSGIGDDLIPEKCSELNLKPSGRGGMVFIPIPACREDFSRIKLTSFDKLIEKTCSTIKNVRLCREPDQRPGGGTGNSGVAPDAAEIQLKSPNWLFGQRKYEEGSSAAKVASRETDVEGPHVNGFCDLNWLSSGNDMNEEDVFQRYLTMTSANETNGWYGGSLLGDQDESSEIYKHYAELCQGPALELFQNDPEREQHYADALSMSSYEIVNDAAVAAEMEAALKEYDQVGADLGIIPTSCKFFADDPSWLTRWLTGEEKVPGI 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3349 907 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 32 841 IPR043573 GO:0043813|GO:0046856
Ssu3g3349 907 MobiDBLite consensus disorder prediction 1 19 - -
Ssu3g3349 907 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g3349 907 ProSiteProfiles Sac phosphatase domain profile. 172 573 IPR002013 GO:0016791
Ssu3g3349 907 Pfam SacI homology domain 108 404 IPR002013 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3349 Ssu-Chr3 90295610 90309892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3349 1 907 Acyl Lipid Metabolism Gene Families AT1G22620 75.439 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3349 K22913 - gmx:100800092 1728.38