Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3347 ATGGATAGGCTTTGCATCCTCCCCGAAAGGAAGATGTTGGTGATTGGTTTTGGAACACATAGGAgtagaaaggaaaaggaagaaaggtaTGTTGCAGTGTTGGTGGAAAGAGTTGAGAACAAAGAAGAAGACAGGAAGGCATCGGAAGGCTGCTGCACAAGCGCAATGAGAATGAAGATGGGACGAGCTAGCCCCCCAACCCTTGGCTGCCATCGAAACCGAATGGGTTTTCTTTCTCACACTCACAGTTCAAACCTTCTCCGCCTCTGTCTTTTTCTTCCTCATCCATTTCATCTTCCACTCACTAACCCAATGCCCCACTTTGTAAATTTTCGGCTTTTCTCGCGCTTCTACACACTCAAAACCCTTCCTTTCTACACCAACCAAGTGGGCACGGGCATGGCTGATACCCTCTGTACCCACCTCCACGAAAACAATGGCAGTGTTGAGAATTCATTGTCCAAGGTTAAGCCGAAACTGGACTCTCAATGTGTCATCCAAGTCCTCAACACCTGCCATCCCAAGCAACCTCAATTGGGTGTCAGGTTTTTCGTTTGGGCTGGATTTCAATCTGGCTACAGGCACAGTGCTTACACGTACAGGAAAGCTTGCAACTTGCTTGGGATTCACCAGAATCCCCAGATTATTCGTGATGTGGTTGAGTCTTATGAGGCTGAAGGGTGTTTAGTCACTGTCAACATGTTTAGGGAGGTGCTGAAGCTGTGTAAAGAAGCTCAGCTTGCTGATGTGGCTTTGTGGGTGTTGAGGAAGATGGAGGAGAGTTTCAACCTCCATGCTGACACTGTGATGTATAATGCGGTTATAAGGTTGTGCTGCAAGAAGGGTGACATTGAAACGGCTGAGAAGTTGATGAGGGAGATGACTTTGAATGGTCTTTGTCCTGATCTTATTACGTATATGGCAATAGTTGAGGGATTCTGTAATGCGGGTCGATCTGAGGATGCTTACTCTGTGCTCAAGGTTATGAGAGTACATGGATGCTCCCCCAATTTGGTGATTTTATCAGCCATTTTAGACGGATTGTGTAGGTCTGGATCTATGGAAAGGGCATTGGAGTTGTTGGATGAAATGGAGAAAGGTGGGGATTGTAGTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGCCAGTGGACAGAAGCATTGGATATTCTGGACAGAATGAAAGCTTTTGGGTGCCATGCAAATCATGTCACTGTTTTTACTTTGATTGAAAGCCTTTGTGCTGAGGGTCGTGTGGAAGAAGCTTATGGGTTGATTGATAAATTTGTGATGGGACATGGTGTTTCGTATGGTGATTGCTACAGTTCACTTGTGATTTCTTTGATACGGATAAAAAAGCTGGAGGAAGCAGAGAAGCTCTTCAAGGAAATGCTTGCTGGTGATGTCAGACCGGATACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTCTGTGTGAAGGACCGGGTATTGGATGGATTCTACTTGCTTGAAGCAATTGAGAATAAGGGATGTTTGTCTTCCATTGACTCTGATATTTATTCTATTCTTTTAATTGGGCTTTGTCAAAGAAGCCACCTGATGGAGGCCACAAAGCTGGCCAAGATAATGCTTAAGAAGTCGGTTCTGCTACAACCTCCGTACAAAGATGGTGCAAttgatattgtaataaaatcTGGAGAAAAAGATCTTGTGAACCAGTTGACTGGCATACATAAGGGACTTTGa 1743 0.4372 MDRLCILPERKMLVIGFGTHRSRKEKEERYVAVLVERVENKEEDRKASEGCCTSAMRMKMGRASPPTLGCHRNRMGFLSHTHSSNLLRLCLFLPHPFHLPLTNPMPHFVNFRLFSRFYTLKTLPFYTNQVGTGMADTLCTHLHENNGSVENSLSKVKPKLDSQCVIQVLNTCHPKQPQLGVRFFVWAGFQSGYRHSAYTYRKACNLLGIHQNPQIIRDVVESYEAEGCLVTVNMFREVLKLCKEAQLADVALWVLRKMEESFNLHADTVMYNAVIRLCCKKGDIETAEKLMREMTLNGLCPDLITYMAIVEGFCNAGRSEDAYSVLKVMRVHGCSPNLVILSAILDGLCRSGSMERALELLDEMEKGGDCSPNVVTYTSVIQSFCKRGQWTEALDILDRMKAFGCHANHVTVFTLIESLCAEGRVEEAYGLIDKFVMGHGVSYGDCYSSLVISLIRIKKLEEAEKLFKEMLAGDVRPDTLASSLLLKELCVKDRVLDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRSHLMEATKLAKIMLKKSVLLQPPYKDGAIDIVIKSGEKDLVNQLTGIHKGL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3347 580 Pfam PPR repeat 446 471 IPR002885 -
Ssu3g3347 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Ssu3g3347 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Ssu3g3347 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Ssu3g3347 580 Gene3D Tetratricopeptide repeat domain 138 296 IPR011990 GO:0005515
Ssu3g3347 580 Gene3D Tetratricopeptide repeat domain 367 437 IPR011990 GO:0005515
Ssu3g3347 580 Gene3D Tetratricopeptide repeat domain 297 366 IPR011990 GO:0005515
Ssu3g3347 580 SUPERFAMILY TPR-like 374 472 IPR011990 GO:0005515
Ssu3g3347 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Ssu3g3347 580 Coils Coil 24 44 - -
Ssu3g3347 580 Gene3D Tetratricopeptide repeat domain 445 576 IPR011990 GO:0005515
Ssu3g3347 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Ssu3g3347 580 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 128 574 - -
Ssu3g3347 580 Pfam PPR repeat family 372 420 IPR002885 -
Ssu3g3347 580 Pfam Pentacotripeptide-repeat region of PRORP 221 364 IPR033443 -
Ssu3g3347 580 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 574 - -
Ssu3g3347 580 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Ssu3g3347 580 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Ssu3g3347 580 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Ssu3g3347 580 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Ssu3g3347 580 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3347 217 551 Glycosyltransferase AT1G05670 24.798 1.88e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3347 - - ccaj:109798432 830.091