Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu3g3341 | ATGATGAACAAGCTGGTGGTGGAAGTTGTGGGTGCGAGCGACCTCATGCCCAAAGATGGGGAAGGGTCAGCTAGCCCCTTTGTAGAGGTAGAGTTTGATGAGCAGCAGCACAGGACTGAAACCAAGCACAAAGACCTCAATCCATGTTGGAATGAGAAGTTTGTGTTCAACATCAACAACCCGAGAGATCTTGCCCACAAGACAATTGAAGTGGTTGTATACAATCACAATGATCGAAAACACAAGAACTTCCTTGGAAGGGTGAGACTTTCAGGGGCTTCCATCCCTCTATCGGAGTCCCAGGCTAGTGTGGAACGCTACCCACTTGAGAAACGTGGTCTCTTTTCTAACATCAGAGGAGATATCGCTCTTAGATGTTATGCGGTGCATGATCATACAGCTCCTTCTCCTTCCCCACAACCACAAGCCCAAGACAGTCCTGCTGCGGAACAActtcaccatcaccatcaccatcaccatcaccttGACGAGGAGGATCAGGAGACTCCCTTGCAAGAAATAAACACCAACATGGTGGTAGATGAGGAAAGCGTGGTTGGTGAgggggagaagaagaagaagaagatgacgatgatgaaaaagaaagaaaaggaagtgaGGACTTTTCACTCTATTCcggcagcagcagcagcagcaccGGCAGTGGAAACGCAAAGGAGGGCTGATTTTGCAAAAGCTGGGCCACCCAACGTAATGTTAATGCAGCAGATCCCGAAGCAAAACCCAGAGTATGCATTGGTGGAGACAAGTCCACCACTGGCAGCTCGTTTGCGCTATAGAGGAGGGGCCAAGATATCAACCACCTACGATTTGGTAGAGCAGATGCATTACTTGTATGTGAATGTGGTGAAGGCAAGGGACCTTCCAGTGATGGATATCACGGGAAGCCTTGACCCTTATGTGGAAATCAAGGTTGGTAACTACAAGGGCCTCACTAAGCACTTGGAGAAGAATCAGAACCCTGTTTGGAAGCAAACCTTTGCCTTCTCCAAGGAGAGGGTGCAATCAAATTTGCTTGAAGTGACCGTGAAGGATAAGGACATTGGGAAAGATGATTTTGTGGGGAGAGTTACGTTTGATCTCACTGAGGTTCCTCTTCGGGTACCCCCAGATAGCCCCTTGGCTCCTCAATGGTACAGATTGGAGGATAAGAAGGGCTACAAAATAGTGAATAATGGGGAAATCATGCTTGCAGTTTGGATGGGAACTCAAGCGGACGAGTCCTTCCCGGAGGCCTGGCACTCCGATGCTCATACCGTGAGTCACTCCAACCTTGCAAACACGCGCTCAAAGGTATATTTCTCACCCAAGCTTTACTATCTTAGAGTTCAAGTAATTGAAGCTCAAGATCTTGTTCCTTCCGAGAAAGGAAGAGCCCCAGACGCTATTGTTAGAGTACAACTAGGGAATCAGATGAGATTCACGAGGGCTTCTCAAATTAGAAGCACCAACCCAGTTTGGAACGACGAGCTTATGTTTGTGGCAGCGGAGCCATTTGAGGATTTTATCGTTGTGACAGTTGAGGACAAAGTAGGTCCTAGTTTTGTAATCTTAGGAAGGGAGATCATATCAGTCAGAAATGTTCCACCCAGACGCGAGACCAGCAAGCTCCCTGAGTCTCGTTGGTACAATTTGCACAGGCCTGGTGCGGTTGGTGAGGAAGAAAcagagaaaaagaaggagaaattcTCAAGCAAGATTCACCTCCGAACGTGTGTTGAGGACGGGTACCATGTGCTTGATGAGTCCACGCATTTCAGCAGTGATCTCCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTGGAACTTGGGATACTGAGTGCCCGGAATTTGCTACCCATGAAGGCCAGGGAAGGTAGGACTACTGATGCATACTGCGTTGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGACACTCTCTCCCCTCGATGGAATGAGCAATATACCTGGGAAGTTTTTGATCCATGCACTGTCATCACAATTGGGGTTTTTGACAACCACCACATCAATGGGAGCAGTGATGCTAGAGATCAGAGAATTGGAAAGGTAAGAATCCGGTTGTCAACTCTGGAAACTGATAGGGTGTATACTCATTTTTATCCTCTGCTGGTTCTCCAACCCAATGGCCTGAGGAAGAATGGAGAGCTTCACTTGGCAGTGAGATTCACTTGCACCGCTTGGGTTAATATGGTAGCCCAGTATGGCAGGCCTTTGCTTCCCAAAATGCATTATGTCCAACCCATACCCGTTAGGCATATAGATTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCTCGCCTATCTAGAGCTGAGCCACCCCTTAGGCGTGAAGCAGTTGAGTATATGCTTGACGTCGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTTTCCGCATAATGTCACTCCTCAAAGGAGTTACAGCTGTTTGTAAATGGTTTGATGACATCTGCACCTGGAGAAACCCAATCACAACCTGCCTTGTTCACGTCTTGTTCTTGATACTTGTTTGCTACCCGGAATTGATCTTGCCCAccatttttctttacttgtttGTAATTGGGATTTGGAATTACCGGTTCAGGCCAAGGAATCCACCCCACATGGATGCTAGGCTTTCACAAGCAGAAACTACCCACCCAGATGAACTGGACGAGGAATTTGACAATTTTCCAACTTCAAAACCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCGGGTAGAGTACAGACTGTGGTTGGAGATTTGGCCACTCAAGGAGAAAGAGCTCAAGCCGTACTAGGTTGGAGAGACTCCAGGGCTACATCTATCTTCATCATCTTCTCACTCATCTGGGCCGTGTTCATTTACATCACTCCTTTCCAAGTAGTAGCAATTCTAATAGGCCTCTATATGCTACGTCATCCTCGGTTTAGGAGCAAGATGCCATCGGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATATGCTGCTATGA | 3054 | 0.4496 | MMNKLVVEVVGASDLMPKDGEGSASPFVEVEFDEQQHRTETKHKDLNPCWNEKFVFNINNPRDLAHKTIEVVVYNHNDRKHKNFLGRVRLSGASIPLSESQASVERYPLEKRGLFSNIRGDIALRCYAVHDHTAPSPSPQPQAQDSPAAEQLHHHHHHHHHLDEEDQETPLQEINTNMVVDEESVVGEGEKKKKKMTMMKKKEKEVRTFHSIPAAAAAAPAVETQRRADFAKAGPPNVMLMQQIPKQNPEYALVETSPPLAARLRYRGGAKISTTYDLVEQMHYLYVNVVKARDLPVMDITGSLDPYVEIKVGNYKGLTKHLEKNQNPVWKQTFAFSKERVQSNLLEVTVKDKDIGKDDFVGRVTFDLTEVPLRVPPDSPLAPQWYRLEDKKGYKIVNNGEIMLAVWMGTQADESFPEAWHSDAHTVSHSNLANTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRAPDAIVRVQLGNQMRFTRASQIRSTNPVWNDELMFVAAEPFEDFIVVTVEDKVGPSFVILGREIISVRNVPPRRETSKLPESRWYNLHRPGAVGEEETEKKKEKFSSKIHLRTCVEDGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVFDPCTVITIGVFDNHHINGSSDARDQRIGKVRIRLSTLETDRVYTHFYPLLVLQPNGLRKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFFRIMSLLKGVTAVCKWFDDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRNPPHMDARLSQAETTHPDELDEEFDNFPTSKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAVLGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILIGLYMLRHPRFRSKMPSVPVNFFKRLPSKSDMLL | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu3g3341 | 1017 | Gene3D | C2 domain | 2 | 167 | IPR035892 | - | |
| Ssu3g3341 | 1017 | Pfam | C2 domain | 447 | 552 | IPR000008 | - | |
| Ssu3g3341 | 1017 | Pfam | C2 domain | 284 | 386 | IPR000008 | - | |
| Ssu3g3341 | 1017 | Pfam | C2 domain | 4 | 103 | IPR000008 | - | |
| Ssu3g3341 | 1017 | Pfam | C2 domain | 610 | 717 | IPR000008 | - | |
| Ssu3g3341 | 1017 | ProSiteProfiles | C2 domain profile. | 266 | 386 | IPR000008 | - | |
| Ssu3g3341 | 1017 | CDD | C2D_MCTP_PRT_plant | 611 | 734 | - | - | |
| Ssu3g3341 | 1017 | ProSiteProfiles | C2 domain profile. | 593 | 715 | IPR000008 | - | |
| Ssu3g3341 | 1017 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 284 | 424 | IPR035892 | - | |
| Ssu3g3341 | 1017 | CDD | C2A_MCTP_PRT_plant | 4 | 127 | - | - | |
| Ssu3g3341 | 1017 | ProSiteProfiles | C2 domain profile. | 1 | 111 | IPR000008 | - | |
| Ssu3g3341 | 1017 | MobiDBLite | consensus disorder prediction | 131 | 169 | - | - | |
| Ssu3g3341 | 1017 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 2 | 1017 | - | - | |
| Ssu3g3341 | 1017 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 446 | 601 | IPR035892 | - | |
| Ssu3g3341 | 1017 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 4 | 143 | IPR035892 | - | |
| Ssu3g3341 | 1017 | CDD | C2B_MCTP_PRT_plant | 284 | 410 | - | - | |
| Ssu3g3341 | 1017 | SMART | C2_3c | 447 | 544 | IPR000008 | - | |
| Ssu3g3341 | 1017 | SMART | C2_3c | 284 | 380 | IPR000008 | - | |
| Ssu3g3341 | 1017 | SMART | C2_3c | 4 | 109 | IPR000008 | - | |
| Ssu3g3341 | 1017 | SMART | C2_3c | 611 | 714 | IPR000008 | - | |
| Ssu3g3341 | 1017 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 610 | 743 | IPR035892 | - | |
| Ssu3g3341 | 1017 | CDD | C2C_MCTP_PRT_plant | 447 | 599 | - | - | |
| Ssu3g3341 | 1017 | Pfam | Plant phosphoribosyltransferase C-terminal | 862 | 1017 | IPR013583 | - | |
| Ssu3g3341 | 1017 | Gene3D | C2 domain | 428 | 580 | IPR035892 | - | |
| Ssu3g3341 | 1017 | Gene3D | C2 domain | 271 | 408 | IPR035892 | - | |
| Ssu3g3341 | 1017 | ProSiteProfiles | C2 domain profile. | 426 | 550 | IPR000008 | - | |
| Ssu3g3341 | 1017 | PANTHER | BNAA09G30540D PROTEIN | 2 | 1017 | - | - | |
| Ssu3g3341 | 1017 | Gene3D | C2 domain | 586 | 739 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu3g3341 | Ssu-Chr3 | 90226036 | 90229089 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu3g3341 | 2 | 1017 | Lipid Metabolism Gene Families | AT1G22610 | 71.292 | 0.0 | 1499 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu3g3341 | - | - | gmx:100778133 | 1806.57 |