Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3337 ATGGCGGTTTCCGGATCCGACGATGTTGGGTTAGAAGTAGAAGCTCCGCTGGTTGTAGACAGCGTTCATGTTGATGGCGCTGTTGACTACAGAGGTCGATCCGTCATCAGATCCAAATCTGGGTCCTGGAGATCAGCTGGGTTTATCATAGGTGTGGAAGTGGCGGAGAGGATTGCATATTATGGGATTCAGACCAACCTCATATCGTATCTCACTGGGCCACTCCAACAGACGACGGCCACCGCTGCAGAGAATGTGAATGTCTGGTCAGGAACTGCTTCCTTGCTTCCTCTCTTTGGGGCTTTCCTTGCTGATTCTTTTCTCGGACGCTACCGCACTATAATACTCGCTTCCTTCGTCTATGTTTTGGGACTAGGCTTGTTAACACTATCAGCTATGCTTCCTTCTCTCACCAATTCTGAGTGCCAAGCTAGCGATAAATTCAAATCATGCTCTCCTCAGTTGCAAGTAATCTtgttctttatctctctttatttgGTCGCCATTGGGCAAGGTGGACACAAGCCCTGTGTTCAGGCTTTTGGAGCAGATCAATTCGATGAACAACATCCAAAGGAGTACAAAGATAGAAGCTCATTCTTTAATTGGTGGTATTTTACTATGTGTGCAGGTTGCCTGGCAACTCTTTGGGTCTTGAACTATATACAAGACAACCTTAGTTGGGTTCTTGGATTTGGAATCCCTTGTGTTGCCATGATTATTGCATTGCTTGTTTTCTTGCTTGGAACAATGACCTACAGGTTTAACATTAAGCAGCGAGACAAAAGCCCCTTTCTCAGAATTGGCCGTGTATTTGTTGTTGCTATAAGAAATCGGGGAACCACCCCATCAAGCCCAGCTGTCAAAGCAGAATATGATGGAATACTTTCTCATCGAAGTTCTGAACAATTCAAGTTCCTCAACAAAGCGTTGTTGGCGCCAGAGGATTCCATAGAAGAAGAGAGTTGTAGCCTAATTGAGGTGGAAGAAGCCAAAGCAGTACTAAGGCTGGTTCCTATTTGGGCTTCGACTCTGGTTTATTCTATCGTGTTTGCTCAAGTTCCTACGTTCTTTACCAAGCAAGGGATGACTATGGAGAGAACAATATTTCCCGGTTTTGACATACCTGCTGCTTCTCTTCAAACGCTTGTCACTCTGGGCATTGTTCTCTTCAGTCCCATCTATGACCGCGTATTTGTGCCAATAGCAAGAGCTATTACTGGCAAACCCTCAGGCATCACAATGCTGCAAAGAATTGGGACTGGAATTTTTATATCCATATTTACTATAGTATTTGCAGCCCTTGTTGAGATGAAAAGATTGAAAACAGCTCAGGAGTCCGGTGGTGTTGATGAACCTAATGCAACTGTTCCAATGAGTATACGGTGGTTGATTCCCCAATATTTCTTGTTCGGAGTCTCTGAAGTTTTTACCATGGTTGGTCTGCAAGAGTTTTTCTATGACCAGGTCCCAAATGAACTAAGAAGCATGGGTCTTGCTCTCTACTTGAGCATCTTTGGTGTTGGAAGCTTTATAAGCGGCTTTCTCATTTCTGTGATAGAAAAAGTGACTGGCAAAGATGGACAAGACAGTTGGTTTGCTAATAATCTCAATAAAGCACATCTTGATTACTTTTACTGGCTACTTGCTGGACTCAGTGTGATGGGATTCGCCTTGTTCATTTGCTTTGccaaatcatatatttataatcacaAAGGAATCAGACGTGAATAG 1734 0.4296 MAVSGSDDVGLEVEAPLVVDSVHVDGAVDYRGRSVIRSKSGSWRSAGFIIGVEVAERIAYYGIQTNLISYLTGPLQQTTATAAENVNVWSGTASLLPLFGAFLADSFLGRYRTIILASFVYVLGLGLLTLSAMLPSLTNSECQASDKFKSCSPQLQVILFFISLYLVAIGQGGHKPCVQAFGADQFDEQHPKEYKDRSSFFNWWYFTMCAGCLATLWVLNYIQDNLSWVLGFGIPCVAMIIALLVFLLGTMTYRFNIKQRDKSPFLRIGRVFVVAIRNRGTTPSSPAVKAEYDGILSHRSSEQFKFLNKALLAPEDSIEEESCSLIEVEEAKAVLRLVPIWASTLVYSIVFAQVPTFFTKQGMTMERTIFPGFDIPAASLQTLVTLGIVLFSPIYDRVFVPIARAITGKPSGITMLQRIGTGIFISIFTIVFAALVEMKRLKTAQESGGVDEPNATVPMSIRWLIPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFISGFLISVIEKVTGKDGQDSWFANNLNKAHLDYFYWLLAGLSVMGFALFICFAKSYIYNHKGIRRE 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3337 577 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 27 573 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu3g3337 577 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 100 124 IPR018456 GO:0006857|GO:0016020|GO:0022857
Ssu3g3337 577 Gene3D MFS general substrate transporter like domains 17 575 IPR036259 -
Ssu3g3337 577 SUPERFAMILY MFS general substrate transporter 40 565 IPR036259 -
Ssu3g3337 577 CDD MFS_NPF5 43 569 IPR044739 GO:0042937|GO:0042938|GO:0071916
Ssu3g3337 577 Pfam POT family 111 532 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu3g3337 577 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT-LIKE PROTEIN 27 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3337 Ssu-Chr3 90175765 90180304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3337 1 568 Organic Solute Cotransporters AT1G22540 65.317 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3337 K14638 - gmx:100776720 940.643