Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3336 ATGGCGGAGGAACCCCAAAAACCAGCTCCCGCGGAAGAAGTGGTGCCCGTCGTGGACCCTGTTCCTGCGGACAAGCCAGCAACCACCGAAGCTGAAGCTGGAGAGAAGGCAGCAGGCGCTGAAACTGAAGAGAAGGTGGCAAGCACCGAAGAAGTGGTGGCGGAAGCAGAGAAGGCCCATGATGACAAGATATCCCAATCGGTTTCTTTCAAGGAGGAAACCAACGTGGTTGGCGACCTCCCCGAAGCGCAGAAGAAAGCCCTTGATGAGCTCAAGAAGCTTGTTCAAGAAGCGCTTAACAAGCACGAGCTAAGTGCTCCCAAGCCCCCCACCCCAGAACCagagaagaagaaacaagaaCAAGTGGCAGCAGAAGAAGCAGAGAAGAAGAAGGAACCAGAACCAGAAGTggcagaagaagagaagaaggaaatcGAAGTGGCTGAAGAGAAGAAGGAAGTAGAAGAGACAACAGAGAAGAAGGAAATCGAAGTGGCTGAAGAGAAGCGGGAAGTAGAAGAGACAACAGAGAAGAAGGAAATCGAAGTGGCTGAAGAGAAGCAGGAAgaagcAGAAGTaacagaagagaagaaggaaatagaAGTGACACAAGAGCAGAAGGAAGTAGTAGAGACAACAGAGAAGAAGGAAATCGAAGTGacagaagagaagaaggaagtGCAAGAGACAACAGAGAAGAAGGAAGTGCAAGTGacggaagagaagaaggaggaggaggcTCTTATAGCGGCAGAGGAAGTTGAGATATGGGGAATTCCCCTGCTAGCGGACGAGAGGAGCGATGTGATACTGCTCAAGTTTCTGAGGGCGAGGGATTTCAAGGTGAAGGATGCCTTCACCATGATCAAGAACACGGTGCGTTGGCGAAAGGAATTCGGAATCGACGCTCTTGTCCTCGAAGATCTTGGTAGTGATTGGGACAAGGTGGTGTTCACGCACGGATACGACAAACATGGTCACCCCGTCTGCTACAACGTGTTTGGTGAGTTTGAGAACAAGGACTTGTACAACAAGACCTTCTCCGACGACGAAAAGCGCAACAAGTTCATCAGGTGGAGGATTCAATTCTTGGAGAAGAGTGTCAGAACCCTTGACTTCTCTCCCACTGCTATCTCCACTATTGTCCAGGTCAACGATCTTAAAAACTCCCCTGGACTCGGCAAGAGGGAACTCAGGCAGGCCACCAATCAGGCCCTTCAATTGCTTCAGGATAACTACCCCGAGTTTGTAGCCAAGCAGATATTTATCAATGTTCCCTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCCTTCCTCACACAGAGGACCAAGAGCAAATTTGTATTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCAAATACATAGCCCCCGAGCTAGTGCCGGTTCAATACGGTGGACTGAGCAGAGAGGGTGAACAGGAATTCACCACTGCTGATCCTGTTGTTACGGAGGTTACAATTAAACCCGCAACAAAACATGCTGTCGAGTTCCCAGTTTCTGAGAAAAGCCATCTAGTTTGGGAAATCCGAGTGGTGGGCTGGGATGTGAGCTATGGAGCTGAATTTGTGCCCAGCGCTGAGGATGGGTACACTGTCATAGTACAGAAGAGCAGGAAAATTGCTCCCGCTAATGAGACTGTAATTAGTAACGGCTTCAAAATTGGCGAACCTGGCAAGGTTGTACTCACCATAGATAACCAAACATCCAAGAAGAAGAAACTCCTCTACAGGTCCAAGACCAAACCCATCTAA 1779 0.4621 MAEEPQKPAPAEEVVPVVDPVPADKPATTEAEAGEKAAGAETEEKVASTEEVVAEAEKAHDDKISQSVSFKEETNVVGDLPEAQKKALDELKKLVQEALNKHELSAPKPPTPEPEKKKQEQVAAEEAEKKKEPEPEVAEEEKKEIEVAEEKKEVEETTEKKEIEVAEEKREVEETTEKKEIEVAEEKQEEAEVTEEKKEIEVTQEQKEVVETTEKKEIEVTEEKKEVQETTEKKEVQVTEEKKEEEALIAAEEVEIWGIPLLADERSDVILLKFLRARDFKVKDAFTMIKNTVRWRKEFGIDALVLEDLGSDWDKVVFTHGYDKHGHPVCYNVFGEFENKDLYNKTFSDDEKRNKFIRWRIQFLEKSVRTLDFSPTAISTIVQVNDLKNSPGLGKRELRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFVFAGPSKSAETLFKYIAPELVPVQYGGLSREGEQEFTTADPVVTEVTIKPATKHAVEFPVSEKSHLVWEIRVVGWDVSYGAEFVPSAEDGYTVIVQKSRKIAPANETVISNGFKIGEPGKVVLTIDNQTSKKKKLLYRSKTKPI 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3336 592 PRINTS Cellular retinaldehyde-binding protein signature 270 292 - -
Ssu3g3336 592 PRINTS Cellular retinaldehyde-binding protein signature 433 452 - -
Ssu3g3336 592 MobiDBLite consensus disorder prediction 98 199 - -
Ssu3g3336 592 SMART CRAL_TRIO_N_2 267 292 IPR011074 -
Ssu3g3336 592 ProSiteProfiles GOLD domain profile. 487 589 IPR009038 -
Ssu3g3336 592 Pfam CRAL/TRIO domain 315 475 IPR001251 -
Ssu3g3336 592 Gene3D - 219 298 - -
Ssu3g3336 592 PANTHER PATELLIN-1 1 592 IPR044834 GO:0008289
Ssu3g3336 592 PANTHER PATELLIN-LIKE PROTEIN 1 592 - -
Ssu3g3336 592 MobiDBLite consensus disorder prediction 108 199 - -
Ssu3g3336 592 SUPERFAMILY CRAL/TRIO N-terminal domain 65 307 IPR036273 -
Ssu3g3336 592 Coils Coil 137 244 - -
Ssu3g3336 592 MobiDBLite consensus disorder prediction 1 78 - -
Ssu3g3336 592 MobiDBLite consensus disorder prediction 36 68 - -
Ssu3g3336 592 Coils Coil 39 59 - -
Ssu3g3336 592 Gene3D GOLD domain 495 589 - -
Ssu3g3336 592 SUPERFAMILY CRAL/TRIO domain 316 477 IPR036865 -
Ssu3g3336 592 SMART sec14_4 310 478 IPR001251 -
Ssu3g3336 592 Gene3D - 315 494 IPR036865 -
Ssu3g3336 592 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 320 481 IPR001251 -
Ssu3g3336 592 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 493 586 IPR036598 -
Ssu3g3336 592 CDD SEC14 312 476 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3336 Ssu-Chr3 90154820 90157043 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3336 271 470 Acyl Lipid Metabolism Gene Families AT1G55840 29.032 4.54e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3336 - K19996 gmx:100806382 613.609