Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3335 ATGGCCGAAAATGATGCAAACCCTCCTCCAGCCGCCACACCGCCACAGGAGGCCGATTCATCCATTGTAGCTGCCGAACCCGTTACTGAGACCAAAGACCTACCTCCTCCGTTGCCGTCCGATAATGATGTAAaagctgctgctgctgctgagGATGTGGTTGCGGTTGAAGACGATGACAAGGACAAAGCAAAAGGTGAGgatgtggttgtggttgaagagaaagagaaagagaaagaagaagaagaggagcaTAAGATTATTGGCGAGAGTGAGTCATTGAAGGAGGAGAGCAATAGGGTTTCTGATTCTGAGAGAAAGGGGGTTGAAGAGCTGAAGAAGTTGGTGAGAGAAGAGTTGGAAGAGAAAGAGGTTTCCATCTGGGGCGTCCCTCTCTTCAAAGATGAGAGGACTGACGTCATTCTCCTCAAGTTCCTAAGAGCGCGCGAGTTGAGAGTCAAGGACGCTCTTGTCATGATTCACAACACCCTCCGATGGAGGAAGGAATTCAACATCGACGCGCTTTTGGACCAAGATCTGGGCGATGACTTGGACAAGGTGGTGTTCATGCACGGACACGGCAGAGAGGGTCATCCCATCTGTTACAACGTGTATGGAGAGTTCCAGAACAGGGACCTCTATCACAAGGCCTTCTCCACCGAGGAAAACCGAACCAAGTTTCTCCGATGGCGGATTCAGTTGTTGGAGCGCAGTATTAGGAACCTCGACTTCTCTCCTGGCGGCATCAACACCATTTTCCAAGTCAATGACCTCAAAAACTCTCCTGGCCCTGCCAAACGGGAGCTTCGCCTTGCCACCAAACAAGCTTTGCAGTTGCTTCAGGACAATTATCCAGAATTTGTTGCCAAACAGGTTTTTATCAATGTCCCCTGGTGGTATCTTGCTTTCTATACCATGATCAATCCCTTCTTGACTCAGAGGACCAAAAGCAAATTTGTATTTGCGGGACCATCCAAGTCTCCCGATACTCTTTTCAAGTTAGTCGCCATTGCCAATTTCCCAAAAAATCTTATCTTCTATTCTCTCTTTTGCTTTCATTGCTGTTTTAATTATGACCTCACCCCTTTGCAAAAATTCCATAGGTATATTTCTCCTGAGCAAGTGCCGGTTCAGTATGGTGGTCTCAGTGTAGATTTCTGTGACTGCAACCCTGATTTCACTATGTCTGATCCTGTCACGGAAATTCCTGTAAAGCCAACCACAAAGAAAACTGTGGAAATTGCTATTTATGAGAAATGCATTATTGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTAGCTATAATGCTGAATTCAAGCCTGATGCGAAACATGCATATACAGTTATCATACAGAAGGCCACAAAGATGTCCCCCACCGATGAACCAGTGGTTTCCAATACCTTTAAAGTTGGTGAACTGGGAAAACTATTGCTCACCATAGACAATCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAACATCAAACCCTACTGTGATTGA 1509 0.442 MAENDANPPPAATPPQEADSSIVAAEPVTETKDLPPPLPSDNDVKAAAAAEDVVAVEDDDKDKAKGEDVVVVEEKEKEKEEEEEHKIIGESESLKEESNRVSDSERKGVEELKKLVREELEEKEVSIWGVPLFKDERTDVILLKFLRARELRVKDALVMIHNTLRWRKEFNIDALLDQDLGDDLDKVVFMHGHGREGHPICYNVYGEFQNRDLYHKAFSTEENRTKFLRWRIQLLERSIRNLDFSPGGINTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFVFAGPSKSPDTLFKLVAIANFPKNLIFYSLFCFHCCFNYDLTPLQKFHRYISPEQVPVQYGGLSVDFCDCNPDFTMSDPVTEIPVKPTTKKTVEIAIYEKCIIVWELRVVGWEVSYNAEFKPDAKHAYTVIIQKATKMSPTDEPVVSNTFKVGELGKLLLTIDNPTLKKKRLLYRFNIKPYCD 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3335 502 Pfam CRAL/TRIO, N-terminal domain 110 162 IPR011074 -
Ssu3g3335 502 SMART CRAL_TRIO_N_2 138 163 IPR011074 -
Ssu3g3335 502 SMART sec14_4 182 349 IPR001251 -
Ssu3g3335 502 MobiDBLite consensus disorder prediction 1 106 - -
Ssu3g3335 502 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 177 381 IPR001251 -
Ssu3g3335 502 Coils Coil 72 97 - -
Ssu3g3335 502 PANTHER PATELLIN-3 366 502 - -
Ssu3g3335 502 PANTHER PATELLIN-3 54 123 - -
Ssu3g3335 502 SUPERFAMILY CRAL/TRIO domain 187 343 IPR036865 -
Ssu3g3335 502 PANTHER PATELLIN-1 366 502 IPR044834 GO:0008289
Ssu3g3335 502 PANTHER PATELLIN-1 121 343 IPR044834 GO:0008289
Ssu3g3335 502 PANTHER PATELLIN-1 54 123 IPR044834 GO:0008289
Ssu3g3335 502 CDD SEC14 186 382 IPR001251 -
Ssu3g3335 502 MobiDBLite consensus disorder prediction 52 106 - -
Ssu3g3335 502 PANTHER PATELLIN-3 121 343 - -
Ssu3g3335 502 Pfam CRAL/TRIO domain 187 344 IPR001251 -
Ssu3g3335 502 SUPERFAMILY CRAL/TRIO N-terminal domain 94 177 IPR036273 -
Ssu3g3335 502 Gene3D - 94 344 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3335 Ssu-Chr3 90133715 90135463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3335 142 386 Acyl Lipid Metabolism Gene Families AT1G55840 25.185 2.22e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3335 - - gmx:100804006 657.907