Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3333 ATGGCAAGGAATCTAATGCATGCGGTTCAGTACGACGCCTATGGGGGAGGTCCCGCTGGGTTGAAGCACGTTGAAGTTGGCGTTCCCAGTCTAAAGACAAATGAGGTTTTACTGAAAGTGGAAGCAATTAGCATAAACCCCGTTGATTGGAAGATTCAGAAGGGTGTTCTCCGTCCTTTATTTTTCCCCGGAAACTTTCCCCACATACCTTGCACTGATGTGGCCGGAGAGATAGCTGAGACCGGACCGCGAGTCAAAGATTTCAAAGTTGGCGACAAAGTCGTTGCTAAACTCACTAGTCGATATGGAGGTGGACTGGCTGAGTTTGCTGTGACGAGTGAGAGCTTAACGGCTGCCAGACCATCTGAAGTCTCAGCCGCTGAAGCTGCAGCATTACCTATCGCTGGGCTCACAGCTCGTGATGCCCTCACTCAAATTGCAGGAGTCAAGCTTGATGGCACTGGCCAGCCCAAGAACATTTTAGTAACTGCTGCTTCTGGTGGTGTAGGTCACTATGCTGTTCAACTAGCAAAACTAGGAAACCACCATGTGACAGCCACTTGTGGGGCTCGCAACATTGACTTTGTTAAGGGCTTAGGTGCCGATGAGGTTCTTGACTACAGGACTCCAGAGGGGGCAGCACTGAGGAGTCCATCTGGGAGGAAATATGATGCAGTGATAAACTGTACAACTGGAATACCTTGGTCAACTTTTGATCCTAATTTGACTGAAAAGGCGGTGGTAGTTGATTTAACACCTAATCCAAGTTCATTGTTGACTGCTGCCCTGAAGAAACTTACTTTTTCCAAGAAGCAGCTGGTGCCATTTTTTGTAGATGTCAAGCGTGAGGGCCTGGAATATCTAGTTCAATTACTGAAGGATGGGAAACTCAAGACTGTTATTGACTCCAAGTTTCCTTTGAGCAAAGCTGAAGATGCATGGGCTAAGAGCATTGATGGCCATGCTACTGGAAAAATTATTGTGGAGCCATAG 993 0.4743 MARNLMHAVQYDAYGGGPAGLKHVEVGVPSLKTNEVLLKVEAISINPVDWKIQKGVLRPLFFPGNFPHIPCTDVAGEIAETGPRVKDFKVGDKVVAKLTSRYGGGLAEFAVTSESLTAARPSEVSAAEAAALPIAGLTARDALTQIAGVKLDGTGQPKNILVTAASGGVGHYAVQLAKLGNHHVTATCGARNIDFVKGLGADEVLDYRTPEGAALRSPSGRKYDAVINCTTGIPWSTFDPNLTEKAVVVDLTPNPSSLLTAALKKLTFSKKQLVPFFVDVKREGLEYLVQLLKDGKLKTVIDSKFPLSKAEDAWAKSIDGHATGKIIVEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3333 330 CDD MDR1 9 328 - -
Ssu3g3333 330 SMART PKS_ER_names_mod 16 328 IPR020843 GO:0016491
Ssu3g3333 330 Pfam Zinc-binding dehydrogenase 199 328 - -
Ssu3g3333 330 PANTHER ZINC-BINDING DEHYDROGENASE FAMILY OXIDOREDUCTASE 4 330 - -
Ssu3g3333 330 Gene3D - 143 281 - -
Ssu3g3333 330 Pfam Alcohol dehydrogenase GroES-like domain 34 100 IPR013154 -
Ssu3g3333 330 PANTHER ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN C16A3.02C 4 330 - -
Ssu3g3333 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 278 IPR036291 -
Ssu3g3333 330 Gene3D - 13 328 - -
Ssu3g3333 330 SUPERFAMILY GroES-like 6 149 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3333 Ssu-Chr3 90125353 90126944 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3333 K00224 - gmx:100790762 559.681