Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3330 ATGGCGGAAGGGGAGGAGCTTCGGCCTGACTTGCTGAAAAACACGCCTTATAACATTGCGAGATTGGAGGACGTGATCGAGCACTCTAAAGCAAGGCAAAAGTATCTTGCGCAGACTTCTAGCCGCTCTGACGGCGGTGATGTTAGGTGGTACTTTTGTAAGATCCCTTTGGCTCCCAACGAGTTGGCAGCCTCATTCCCGCCAACAGAGATTGTGGGCAAGAGTGACTATTTTCGATTTGGCATGAGAGATTCTCTCGCTATTGAAGCATCTTTCTTGcagAGAGAGGAAGAATTACTTTCTAGTTGGTGGAGGGAGTATGCAGAATGCAGTGAAGGCCCAAGAGAACGACAGAGTTCCAGTATCAATTCAGATAATGGATCTCTTTTGGGACATACTCAATCATCTCAGCTATATGAAATAGAGGAAGAGAGGGTTGGTGTACCAGTAAAGGGAGGACTGTATGAGGTAGATTTGATTAAGAGACATTGTTTCCCTGTTTATTGGAATGGAGAAAATCGGCGTGTCCTAAGAGGCCATTGGTTTGCTCGTAAAGGGGGCCTCGATTGGCTACCACTTCGTGAAGATGTTGCTGAACAACTAGAGATTGCTTATCGTAGTCAGGTTTGGCACCGGAGAACATTTCAACCGTCAGGACTTTTTGCTGCTCGAGTTGATTTGCAAGGCTCCACCCACGGCCTGCATGCCCTTTTCACGGGAGAAGATGATACCTGGGAAGCCTGGCTAAATGTTGATGCTTCTGGCTTTTCTAGTTTTGTTAGTTTTGCTGGAAATGGAATCAAGCTTAGGCGTGGTTACTCTCCATCAAATTCACCAAAACCAACCCAGGATGAATTAAGGCAACAGAAGGAGGAGGATATGGATGATTACTGTTCGCAGGTTCCTGTTCGACACTTGGTATTTATGGTTCATGGGATTGGTCAAAGATTGGAAAAATCCAATTTGGTTGATGATGTGGGTAATTTCCGGCATATTACAGCAAGTCTTGCAGAGCAGCACCTTACTCCACATCAGCGTGGCACTCAAAGGGTCCTCTTTATCCCATGCCAGTGGAGAAAAGGTTTGAAACTGAGTGGTGAAACTGCTGTTGAAAAAATAACTTTGGATGGAGTGCGGGGATTGCGTGTCACGCTGAGCGCAACTGTTCACGACGTGTTATACTACATGAGCCCAATTTACTGTCAAGACATAATTGACTCgGTATCCAACCAACTGAATCGATTATATTTGAAGTTTCTCAAAAGGAATCCTGGATATGATGGAAAGGTTTCATTATATGGTCATTCTCTGGGAAGTGTCCTCTCATATGATATCCTTTGCCATCAAGATAATCTATCATCCCCATTTCCAATGAATTGGATGTATAAGGAACATGGTGAAAATGAGGAATCACTCCCTGATAAGAAAAATCATTATGTACAGAACTCACCAATCAATCAGAATGACACATTCAATATGGTGAGCCCCTCTGAAGAAAAGAAGAGTACGCAACAGACTTGTTCAGAAATGGAGGCAGAATATTCTGATGAGTCCTCAGTTTTAGGCCCTGCATTATCAAGTGTACATGAATATACTGCAGAACCTAATTCTCTGGAACCAAGTAATAAGGGGGATGTTTCCCAGTTCCTTTCTGATTCTAGTGACATAGTTTTTGAGAAAATGGGTGCATTGGATAAGCCTGAGAGCATGAATGTTGGGCTGCCAGTGGATAAGGAAGAATGTAATGTTACAAGCAACGAAGATGGCGTATTCAAGAAGCTCAGAGAAGAGATTGAATCACTGAAAGCCAATCTAGCTGCACTGGAATCACGTCATAGCAATAATCATACTGAGGAAGAGTTACATTCTGTACGAAAGTTATCTAAAAAGTTACCTCCCATACAAGATGCACCAAAGAGTTATACTCCATATATCAAGTATACCAAGCTTCAATTCAAGGTTGATACATTCTTTGCTGTTGGATCCCCTCTTGGTGTATTTCTTGCACTTCGTAATATCCGAATGGGTATTGGTAGAGGCCAAGAATATTGGGAGCAGGAAAATATAAGAGAGGAGATGCCAGCTTGTCGGCAGATGTTCAACATTTTTCACCCCTTTGATCCTGTAGCATACAGGATAGAGCCACTTGTCTGCAAAGAATACATCAGCCAACGGCCTGTTTTGATTCCATATCACAGAGGAGGAAAAAGGTTGCATATTGGATTTCAGGAATTTACTGAAGACCTAGCAGTTCGAACTCATGCAATAAAGAATTATATGAAATCTGCAAGGGATAAGGTAATCACAGTTTGTCAGTCGAGGAAAATGGAGGACACAGAAGGGGAGAGTTCTGAAGAGGAGGGGCCATCATATGGATCTTTTATGATGGAGAGGTTGACAGGAAGCAAGAGTGGACGAATTGATCACATGCTTCAGGACAAGACCTTTGAGCATCCATATCTGCAAGCCATTGGAGCACATACGTAA 2487 0.4298 MAEGEELRPDLLKNTPYNIARLEDVIEHSKARQKYLAQTSSRSDGGDVRWYFCKIPLAPNELAASFPPTEIVGKSDYFRFGMRDSLAIEASFLQREEELLSSWWREYAECSEGPRERQSSSINSDNGSLLGHTQSSQLYEIEEERVGVPVKGGLYEVDLIKRHCFPVYWNGENRRVLRGHWFARKGGLDWLPLREDVAEQLEIAYRSQVWHRRTFQPSGLFAARVDLQGSTHGLHALFTGEDDTWEAWLNVDASGFSSFVSFAGNGIKLRRGYSPSNSPKPTQDELRQQKEEDMDDYCSQVPVRHLVFMVHGIGQRLEKSNLVDDVGNFRHITASLAEQHLTPHQRGTQRVLFIPCQWRKGLKLSGETAVEKITLDGVRGLRVTLSATVHDVLYYMSPIYCQDIIDSVSNQLNRLYLKFLKRNPGYDGKVSLYGHSLGSVLSYDILCHQDNLSSPFPMNWMYKEHGENEESLPDKKNHYVQNSPINQNDTFNMVSPSEEKKSTQQTCSEMEAEYSDESSVLGPALSSVHEYTAEPNSLEPSNKGDVSQFLSDSSDIVFEKMGALDKPESMNVGLPVDKEECNVTSNEDGVFKKLREEIESLKANLAALESRHSNNHTEEELHSVRKLSKKLPPIQDAPKSYTPYIKYTKLQFKVDTFFAVGSPLGVFLALRNIRMGIGRGQEYWEQENIREEMPACRQMFNIFHPFDPVAYRIEPLVCKEYISQRPVLIPYHRGGKRLHIGFQEFTEDLAVRTHAIKNYMKSARDKVITVCQSRKMEDTEGESSEEEGPSYGSFMMERLTGSKSGRIDHMLQDKTFEHPYLQAIGAHT 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3330 828 ProSiteProfiles DDHD domain profile. 650 828 IPR004177 GO:0046872
Ssu3g3330 828 PANTHER BNAA08G07860D PROTEIN 27 828 - -
Ssu3g3330 828 MobiDBLite consensus disorder prediction 271 293 - -
Ssu3g3330 828 SUPERFAMILY alpha/beta-Hydrolases 392 483 IPR029058 -
Ssu3g3330 828 SMART DDHD_2a 650 828 IPR004177 GO:0046872
Ssu3g3330 828 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 27 828 - -
Ssu3g3330 828 Coils Coil 591 611 - -
Ssu3g3330 828 Pfam DDHD domain 650 784 IPR004177 GO:0046872
Ssu3g3330 828 MobiDBLite consensus disorder prediction 774 793 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3330 3 828 Acyl Lipid Metabolism Gene Families AT1G31480 64.160 0.0 1082
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3330 - - gmx:100777360 1556.19