Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3319 ATGAGGAACAAGGGTGTATGGGAATATGTAGGCACAGCAACAGCAATGCTTGTACTGTTGCTATGCTGGGATGGGATTGCAGAAGTAAAGTCACAGAAGGTACCtgctttgtttgtttttggtGATTCATTGGTTGAAGTTGGCAACAATAACTTCCTAAGGACCATCGCAAGGGCAAATTACTTTCCTTACGGCATCGACTTCAGCAGGGGTTCTACTGGCCGATTTTCTAATGGCAAATCCCTCATTGACTTCATTGGAGACATGCTGGGTGTTCCTTCTCCTCCACCTTTTGTAGACCCCTCCACTGCTGGAGCCAGAATACTTTATGGTGTCAATTACGCATCAGCTGCTTCCGGCATTCTTGACGACTCAGGGAGACACTATGGTGATCGGTATAGCCTGAGCCAGCAAGTCCTGAACTTCGAGAACACATTGAATCAGTATAGGACAATGATGAATGCAACTACATTGAATCAGTTCTTAGCCAAGTCTATAGCAGTTGTGGTGACTGGAAACAATGACTACATCAACAACTACCTCCTGCCTGGCTTATATGGCTCCAGTTATAATTATACTGTCCAAGAGTTTGGCAATCTTCTTGTTAATAGCCTTGGGCGACTACTTTTGGCACTACATAGCGTAGGATTAAGAAAGTTCTTCCTAGCAGGAGTTGGGCCACTGGGTTGCATCCCTAATGTTCGAGCCACCGGTTTGGCCCCACAAGGAAGATGCGTGGACTCTGTTAATCAGATGGTTGGAACCTTCAATGAAGGGCTTAGATCAATGGTGGACCAACTCAACACAGACCATCCTGATGCTATCTTTGTATACGCTAACACCTACCGTGTCCTGGGCGATATCCTAAATAACCCCGCCGCCTACTCGTTTAATGTTGTCGATAGAGCTTGTTGTGGGATTGGAAGGAACCGAGGTCAAATAACATGCCTCCCATTTCAATTTCCATGTGCATACAGAAACCAGTTTGTCTTTTGGGATGCCTTCCACCCGACAGAATCTGCAATGTATGTCTTTGCCTGGAGAGCTGTTAATGGACCGCCAGATGATGCTTATCCAATTAATATGAAACAAATGGCTCTCATTTAA 1107 0.4472 MRNKGVWEYVGTATAMLVLLLCWDGIAEVKSQKVPALFVFGDSLVEVGNNNFLRTIARANYFPYGIDFSRGSTGRFSNGKSLIDFIGDMLGVPSPPPFVDPSTAGARILYGVNYASAASGILDDSGRHYGDRYSLSQQVLNFENTLNQYRTMMNATTLNQFLAKSIAVVVTGNNDYINNYLLPGLYGSSYNYTVQEFGNLLVNSLGRLLLALHSVGLRKFFLAGVGPLGCIPNVRATGLAPQGRCVDSVNQMVGTFNEGLRSMVDQLNTDHPDAIFVYANTYRVLGDILNNPAAYSFNVVDRACCGIGRNRGQITCLPFQFPCAYRNQFVFWDAFHPTESAMYVFAWRAVNGPPDDAYPINMKQMALI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3319 368 Pfam GDSL-like Lipase/Acylhydrolase 37 341 IPR001087 GO:0016788
Ssu3g3319 368 Gene3D SGNH hydrolase 27 352 IPR036514 -
Ssu3g3319 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 28 366 - -
Ssu3g3319 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 28 366 - -
Ssu3g3319 368 CDD SGNH_plant_lipase_like 35 353 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3319 Ssu-Chr3 89887637 89890812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3319 34 365 Acyl Lipid Metabolism Gene Families AT4G10950 35.928 2.97e-67 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3319 - - gmx:100782184 632.869