Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3313 ATGGATAGAACTGTTGATGCCGATATTGTGATCGTGGGAGGTGGTATATGCGGCCTTGCAACAGCCCTTGCCCTTCACAGGAAGAGAATTAGTAGTTTGGTGTTAGAAAGATCAGAGAATTTGCGAGCTACAGGAGCAGCTATAATAGTGCAGGCAAATGGCTGGCGTGCACTTGATCAGCTTGGCATTGGCTCAACACTTAGACAAACTGCTGTTCAAATACAAGGAATGGAACATGTTATAGTTAActtgattttgttaataaacAGGGTTATTCAGGAATGTCGCTGTTTAAAGCGTCTTGATCTGATAAAAGCCATGGCCGACAATTTACCGGCGGGGACTGTACGTACCAACTGTCAAGTGCTTTCCATTGAATTAGATCCTGTTACACAGTATCCACAGCTTATGCTTAGCAGTGGAAGTATCCTTCAAGCTAAGGTTGTTATTGGATGTGATGGCGTGAATTCTGCCATTGCAAATATGTTTGGGTTACACCAAACGAAGCTCTTGCTCTTCTCTACAACTGTTGCACGAGGCTtcacaaattattcaaatggcCATCAATTTGCCAGTGAGTTTGTTGTGATGAGCAGATGTCAAGCCCAACTCGGAAGAATCCCAGTGTCTGACAAGCTCGTTTATTGGTTTGTGACAAGGCCAAGGACATCTCAAGaTTCAacaatttggaaagacccagTTCTTATTAGACAATCATTAATGGAATCAATGAAAGGTTTCCCAGAAGAGGCGGTGGACATGATACGAAATTGCAAGTTGAGCTTGTTGCATCTCACTGAGTTGAAGTATCGGCCACCGTGGGACTTTGTCTATAACAACTTCAGGAAAGGTACAGTAACAATTGCTGGTGACGCAATGCATGCCACAGGCCCATTCATTGCACAGGGTGGCTCAGCCTCTATAGAAGATGCTATTGTTCTTGCTAGATGCATGGCACAAAACTTGCACAATACTAAGAAAGCCCAAACAGAGATAAACTTCGCAGTGGCAGAGGAAGCATTTGATCAATATGTGAAAGAAAGGAAGATGAGAATCTTTTGGCTCTCTTTGCATTCTTTCCTTGTTGGGAAGAAGCTTGACACAAAATCATCGATAGTCAAATTCATTATCCTTGCAATCATGGCCGTTCTCTTTAGAGACCCGGATTGGCATAGCCGCTATCATTGTGGAAATCTATAG 1200 0.4133 MDRTVDADIVIVGGGICGLATALALHRKRISSLVLERSENLRATGAAIIVQANGWRALDQLGIGSTLRQTAVQIQGMEHVIVNLILLINRVIQECRCLKRLDLIKAMADNLPAGTVRTNCQVLSIELDPVTQYPQLMLSSGSILQAKVVIGCDGVNSAIANMFGLHQTKLLLFSTTVARGFTNYSNGHQFASEFVVMSRCQAQLGRIPVSDKLVYWFVTRPRTSQDSTIWKDPVLIRQSLMESMKGFPEEAVDMIRNCKLSLLHLTELKYRPPWDFVYNNFRKGTVTIAGDAMHATGPFIAQGGSASIEDAIVLARCMAQNLHNTKKAQTEINFAVAEEAFDQYVKERKMRIFWLSLHSFLVGKKLDTKSSIVKFIILAIMAVLFRDPDWHSRYHCGNL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3313 399 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 2 399 - -
Ssu3g3313 399 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 2 399 IPR044560 -
Ssu3g3313 399 Pfam FAD binding domain 7 327 IPR002938 GO:0071949
Ssu3g3313 399 Gene3D - 8 373 IPR036188 -
Ssu3g3313 399 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 - -
Ssu3g3313 399 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 298 314 - -
Ssu3g3313 399 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 145 160 - -
Ssu3g3313 399 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 283 298 - -
Ssu3g3313 399 SUPERFAMILY FAD/NAD(P)-binding domain 7 388 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3313 Ssu-Chr3 89788964 89793698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3313 1 363 Miscellaneous Gene Families AT5G05320 34.492 1.14e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3313 - - gmx:100775200 654.825