Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3309 ATGGTGGATAAACCAATGAACATTCATCGAAGTCGGTTCCCACTGTCGATCACGAAGCTCCTCTTCTGGTCGCTTATGATCCTCAGCTTCATCGTGCTGTTGCTGTTGGGATCTCCTCCCTCCTCCGCTTCCCCATCCCCCTCCCGCCGCTCCCTCCGCGGCGGCGCCGACTGGGAGTCCTCCGTCCGCGAATCCGCCACCGCCACCGCCTCCAAGTCcaaatccaaatccaaatcCCTCAGGGTGCTGGTCACCGGCGCAGCCGGTTTCGTGGGGACACACGTGTCCATCGCCCTGAAGCGTCGCGGAGACGGCGTTGTCGGCATCGACAACTACAACCGCTACTACGACCCTTCCCTGAAGCGTGCCCGCACCCACCTCCTTGCACGCCACGGCGTCTTCGTCGTCGAGGGTGACATCAACGACGCCTCCCTCTTAAGGTCTCTCTTCAAATTGGTCAAATTCACTCACGTGATGCACCTCGCGGCCCAGGCCGGGGTCCGCTATGCGATGAAGAACCCTAACTCCTACGTCCACAGCAACATTGCGGGCCTCGTCAGCGTTCTCGAGGCCTGCAAGAACGCCAACCCGCAGCCCGCCATTGTGTGGGCCTCGTCCAGCTCCGTCTACGGCCTCAATTCCAAGGTTCCATTCTCTGAGCGAGATCGGACGGACCGGCCTGCTAGCTTGTACGCCGCCACCAAGAAGGCCGGTGAGGAGATTGCCCACACTTATAACCATATCTACGGCCTTTCCATTACTGGACTGCGGTTCTTCACTGTTTATGGGCCTTGGGGCCGGCCCGATATGGCCTATTTCTTCTTCACTAAGGATATTTTGAAAGGGAAGCAGATACCCGTGTTTGAGGGTCCTAATGGACGCTCCGTTGCGAGGGACTTTACTTACATTGATGATATCGTGAAGGGTTGCTTGGGGGCGTTGGACACTGCCAACAAGAGCACGGGGagtgggggcaagaagaatggGCCGGCCCAGTTAAGGGTTTACAATCTGGGCAACACTTCGCCGGTGCCGGTGACCAAGCTGGTGAGCATATTGGAGAAGTTGCTGAAGGTGAAGGCCAAGAAGAAAGTGATGCCAATGCCCACCAATGGGGATGTTATTTTCACGCATGCCAATATTAGCTTGGCCCGGAAGGAGCTTGGGTACAAGCCCACCACGAATTTGGAAACGGGCTTGAGCAAATTTGTGGATTGGTATATGGAATATTATTCTCCCTCCGGGGAGAAGAAGAGTGCTTGGTAA 1266 0.5506 MVDKPMNIHRSRFPLSITKLLFWSLMILSFIVLLLLGSPPSSASPSPSRRSLRGGADWESSVRESATATASKSKSKSKSLRVLVTGAAGFVGTHVSIALKRRGDGVVGIDNYNRYYDPSLKRARTHLLARHGVFVVEGDINDASLLRSLFKLVKFTHVMHLAAQAGVRYAMKNPNSYVHSNIAGLVSVLEACKNANPQPAIVWASSSSVYGLNSKVPFSERDRTDRPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKDILKGKQIPVFEGPNGRSVARDFTYIDDIVKGCLGALDTANKSTGSGGKKNGPAQLRVYNLGNTSPVPVTKLVSILEKLLKVKAKKKVMPMPTNGDVIFTHANISLARKELGYKPTTNLETGLSKFVDWYMEYYSPSGEKKSAW 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3309 421 PANTHER UDP-GLUCURONATE 4-EPIMERASE 4 9 416 - -
Ssu3g3309 421 PANTHER EPIMERASE-RELATED 9 416 - -
Ssu3g3309 421 Gene3D - 80 412 - -
Ssu3g3309 421 Pfam NAD dependent epimerase/dehydratase family 82 319 IPR001509 -
Ssu3g3309 421 PRINTS Nucleotide sugar epimerase signature 108 124 - -
Ssu3g3309 421 PRINTS Nucleotide sugar epimerase signature 298 313 - -
Ssu3g3309 421 PRINTS Nucleotide sugar epimerase signature 373 390 - -
Ssu3g3309 421 PRINTS Nucleotide sugar epimerase signature 333 348 - -
Ssu3g3309 421 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 411 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3309 Ssu-Chr3 89740802 89742067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3309 8 420 Miscellaneous Gene Families AT4G00110 73.621 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3309 K08679 - gmx:100819586 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3309 3 89740802 89742067 Ssu3g3309 3 89740802 89742067 ECH