Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3298 ATGTCAAGACTATCATCGTTAGTAACATTCACAATAATGGTGATGGCCACAATGACAAGGGCAACTTCAATTAACTATGCAGAAGCATTAGCAAAGagcattttgttttttgaaggGCAGAGGTCTGGCAAGTTGCCACCTTCTCAACGCATGAAATGGCGGAAAGACTCAGCACTTAATGATGGCTTTGATATTCATATAAATATGATAGGTGGATACTATGAGGCTGGCGACAATGTCAAATTCAATTTCCCTATGGCCTTCACAACGACCATGCTAGCTTGGAGTGTCTTAGAATTTGGAGATCTGATGGGTTTAGAGCTGCAAAATGCATTGGAAGCAATCCAATGGGGAACTGATTATTTCCTTAAAGCCACGAAATTTCCTTATATAGTTGTGGCCCAAGTTGGCAATCCTGTTGCCGATCACAATTGTTGGGAGAGGCCAGAAGACATGGACACCCCTCGAACCTCTTACTTTCTCTCTCCAAAGAAGCCAGGTTCAGAAGTATCTGCTGAGATTGCAGCTGCACTTGCAGCATCTTCCATCGCATTTAGGAGAACTGACGCTCGCTATTCCAAGTTGCTTCTCTATAGGGCTATGCAGGTGTTTCACTTTGCAAATAAAAATCGTGGATCTTATAATAACAGCGTAGGTGCGGCCCCTTCTACTGTGATTTTGGTGGCTACATGGTATGATTTTCACGgtcataatattcataatttttgcACGGAAAACCtagtacatattattattattattatttatcaaactCAGGATGAGTTGATTTGGGGAGCGGCATGGTTGTATGAAGCCACTAATATGCCCAAATATCGAAATTTTGTAAAAGCAAACATCCAATCCATGGGCGGTAATCTCGTTGAATTTGGATGGGACAGCAAGCATGCTGGCATATATGTGCTTGTTTCGCAGGTTTGtcatctttcattttctcttgaaTTCGCGAATCTTTTCATTCCTAATGCAGATAAATTTATATGCTCTTTGTTGCCGACTTCGCCTACCAAATCAGTCTCGTACTCTAAAGGTGGGCTTCTATTCAGACCTGGAGGAAGTAACCTACAACACACAACAGCTTTgtcatttcttttaattgtttatgcACGCTACATGCATGCTGCGAAGAAAGCAATACCTTGTGAGAATGAAGTTGCCGACCCAGCTAGGCTCATAAATCTTGCAAAAAGTCAGGTGGATTACATACTAGGAAACAACCCACAAGGGATGTCATACATGGTGGGGTATGGGCACAAGTTTCCTCAGAAGATACACCATCGCGGTTCGACCTTACCATCTATGGATTTGCACCCACAACACCTTGGGTGTCGTGATGGAGACCAATATTTCAAAACAGAAAAGCCCAATCCTAACGTCCTAACAGGGGCTGTGGTTGGAGGACCTGCAGAAGATGATTCTTTTCAGGATTCACGCTACAATGTTGGGCAATCAGAGCCAACCACATACATCAATGCTCCTTTTGTTGGTGTTTTGGCTTACTTCAACAAGCCTATTATTAgttttacccaaaaataa 1554 0.399 MSRLSSLVTFTIMVMATMTRATSINYAEALAKSILFFEGQRSGKLPPSQRMKWRKDSALNDGFDIHINMIGGYYEAGDNVKFNFPMAFTTTMLAWSVLEFGDLMGLELQNALEAIQWGTDYFLKATKFPYIVVAQVGNPVADHNCWERPEDMDTPRTSYFLSPKKPGSEVSAEIAAALAASSIAFRRTDARYSKLLLYRAMQVFHFANKNRGSYNNSVGAAPSTVILVATWYDFHGHNIHNFCTENLVHIIIIIIYQTQDELIWGAAWLYEATNMPKYRNFVKANIQSMGGNLVEFGWDSKHAGIYVLVSQVCHLSFSLEFANLFIPNADKFICSLLPTSPTKSVSYSKGGLLFRPGGSNLQHTTALSFLLIVYARYMHAAKKAIPCENEVADPARLINLAKSQVDYILGNNPQGMSYMVGYGHKFPQKIHHRGSTLPSMDLHPQHLGCRDGDQYFKTEKPNPNVLTGAVVGGPAEDDSFQDSRYNVGQSEPTTYINAPFVGVLAYFNKPIISFTQK 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3298 517 PANTHER ENDO-1,4-BETA-GLUCANASE 9 510 - -
Ssu3g3298 517 SUPERFAMILY Six-hairpin glycosidases 25 509 IPR008928 GO:0005975
Ssu3g3298 517 Pfam Glycosyl hydrolase family 9 26 504 IPR001701 GO:0004553|GO:0005975
Ssu3g3298 517 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 407 433 IPR018221 -
Ssu3g3298 517 Gene3D - 21 515 IPR012341 GO:0005975
Ssu3g3298 517 PANTHER ENDOGLUCANASE 9 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3298 Ssu-Chr3 89581276 89589773 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3298 1 508 Glycoside Hydrolase AT1G70710 53.592 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3298 K01179 - fve:101312108 595.89