Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3296 ATGGGCTTCCCGCAAAGGTTGTTGTTGATACTGGTGGGTACCATATTGAGTCTAACAGATAAAGGCAGGGGTTGGCAGCATAATTATGGAGAAGCGTTGTCAAAGAGCATATTGTTCTTTGAAGGGCAGAGGTCAGGGAAGTTGCCACCAACACAGAGGATGACTTGGAGGAACGATTCTGCGCTTCAAGATGTCTATCTAATTGCTGATACTACGGTCTCTCCTTTCGCTCGTAAAGTTGACTTGGTTGGTGGTTACTACGACGCCGGTGACAACGTGAAATTCAACTTTCCTATGGCATTTTCAACAACCATGCTGGCCTGGAGTGTAATAGAGTTCGGGAAATTCATGGGTTCAGACCTTAAACATGCGCTAGACGCAATCCGTTGGGCCACGGATTATTTCCTCAAAGCCACAAGCATCCCGGGGTTTGTGTTTGCACAAGTTGGTGACCCATATGCTGATCATAGTTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTTTGCTGTTAGCAGGGACTACCCTGGCTCCGAAGTTTCAGCAGAGATAGCAGCAGCACTTGCAGCCTCTTCAATAGTATATAGGAAGTATCATATCGGTTATTCTGCAAGACTTCTCCAAAGGGCTATAATGGTTTTTGACTTTGCAGATAAATACAGAGGGTCATACAATGACAGCCTCGGACGGTGGGTATGCCCATTCTATTGTGATTTTAGCGGCTACCAGGACGAATTGGTCTGGGGTGCAGCATGGTTGTTCAGGGCTACTAAGCTCCCTTATTACTTGAATTACATTGAAGAAAATATTCATAATCTGAAAAACTTTGGTGAATTTGGATGGGACTCAAAGGACGCTGGCATCAATGTGCTCGTTTCTAAGCTCCTAATTAATAATAGCTCTATTTCTAAGCCTTTCATCCTCAATGCGGACAAGTTTGTCTGTACTGTGCTACCTGAATCACCTTCAGTATCAGTCTCATACTCTCCAGGTGGGCTTCTATTCAAGCCTGGCGGGAGTAACTTGCAGCATGCAACAGCATTCTCATTTCTGTTACTGGTTTATGCTGACTatttgaaaaagacaaataaagagATTCACTGTGGCCGTCAAATTTTTGCTTCTCCAAGGCGACTTAAACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCACTGAATATGTCATACATGGTAGGATACGGACCAAAATTTCCTGAAAGAATACATCATCGTGCGTCGTCGTTGCCATCCGTAGATCAGCACCCTGGCCACATTGATTGCAAAGGAGGatccttttattttgaaagcgAAAATCCAAATCCCAACTTGCTTTTAGGAGCTGTTGTGGGGGGACCTGATATTAAGGATTCATACACAGATTCTCGAGCAGATTTTGTACACTCTGAACCTACAACATACATCAATGCACCTCTTGTGGGTGTTTTGGCTTACTTCAAATCACATCCATCCTAA 1494 0.4357 MGFPQRLLLILVGTILSLTDKGRGWQHNYGEALSKSILFFEGQRSGKLPPTQRMTWRNDSALQDVYLIADTTVSPFARKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGSDLKHALDAIRWATDYFLKATSIPGFVFAQVGDPYADHSCWERPEDMDTPRTAFAVSRDYPGSEVSAEIAAALAASSIVYRKYHIGYSARLLQRAIMVFDFADKYRGSYNDSLGRWVCPFYCDFSGYQDELVWGAAWLFRATKLPYYLNYIEENIHNLKNFGEFGWDSKDAGINVLVSKLLINNSSISKPFILNADKFVCTVLPESPSVSVSYSPGGLLFKPGGSNLQHATAFSFLLLVYADYLKKTNKEIHCGRQIFASPRRLKQIARGQVDYILGSNPLNMSYMVGYGPKFPERIHHRASSLPSVDQHPGHIDCKGGSFYFESENPNPNLLLGAVVGGPDIKDSYTDSRADFVHSEPTTYINAPLVGVLAYFKSHPS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3296 497 Gene3D - 25 497 IPR012341 GO:0005975
Ssu3g3296 497 PANTHER ENDO-1,4-BETA-GLUCANASE 16 496 - -
Ssu3g3296 497 SUPERFAMILY Six-hairpin glycosidases 23 494 IPR008928 GO:0005975
Ssu3g3296 497 PANTHER ENDOGLUCANASE 16 496 - -
Ssu3g3296 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 392 418 IPR018221 -
Ssu3g3296 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Ssu3g3296 497 Pfam Glycosyl hydrolase family 9 29 489 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3296 Ssu-Chr3 89556047 89560740 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3296 27 497 Glycoside Hydrolase AT1G70710 60.211 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3296 K01179 - gmx:100775752 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3296 3 89556047 89560740 Ssu3g3296 3 89556047 89560740 ECH