Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3293 ATGGGCACGAACCCTGATCTTGAGCATGCTCCACAAATTCCCTTGCTGAATCCTCCAAGTTCCCTAGCAAGGGAAAGTGGAAGGAGAGTGCAAAAGGGTACCCTTGTTTTCATTGTCTCGATCGTTTTCCTAATGTCATTGGTTGCACTTATCATAAACCTGCAGAGCCATGAGCCCTTAGAAAAGCagcaaaacaataatattatgaaacCTTTCGTAACGGAAACCAAGTCCGTGCCATTACACCCTAGAGGGGTTGCTGAGGGGGTTTCAGCCAAGTCGAACCCATATCTTTCACAGATGGCTTCATATAATTGGACAAATGCCATGTTATCTTGGCAAAGAACAGCTTTCCATTTTCAACCTGAAAGGAACTGGATGAACGGTCCACTGTTTTACATGGGATGGTACCATATATTTTACCAATACAATCCTGATTCAGCTGTGTGGGGCAACATAACATGGGGTCACGCTGTATCAAGGGACTTGATTCACTGGTTCTACCTTCCCATTGCGTTGGTTCCAAATAGGTGGTTTGATATCAACGGTGTATGGTCAGGGTCAGCCACTCTTTTGCCAGATGGCAAAATCGTAATGCTCTACACGGGAAATACGGAAAAAACTGTGCAAGTCCAAAATCTTGTGTATCCCGCCAACCTATCTGATCCCCTCCTCCTTGATTGGGTCAAATACACTGATAACCCAGTCTTGGTGCCTCCACTAGGCATTGATTCAAAGGATTTTCGTGACCCAACCACTGCATGGATTGGGCCAGATGAGAAGTGGAGGGTCACTATTGGGTCAAAGGTCAATAAGACAGGTCTTTCATTGGTTTATAAAACCAAAGATTTCATCCACTATGAGCTCAGTGATAACTATTTGCATGCAGTCCCAGATACGGGTATGTGGGAGTGCGTGGACTTTTACCCAGTTTCAGTAAACGGGCCTAACGGTTTGGATACATCTATAAATGGGCCAGCAGTGAAACATGTGTTAAAGGCTAGTTTGGATGACACTAAGGTGGATCATTATGCAATTGGGACCTACTTCATTGAAAATGATACATGGGTGCCCGATAACCCACATCAGGATGTGGGTATCGGGTTGAAGTTGGACTATGGGAGATATTATGCGTCAAAGACATTTTATGACCAACACAAACGAAGAAGGGTGCTGTGGGGTTGGATCAATGAATCAGATAGCGAAATTGCTGACTTGAAAAAGGGCTGGGCATCTTTGCAgACTCTTCCAAGAACAGTGGTGTTTGACAAGAAGACTAGAACTAATCTGCTTCAGTGGCCGGTGGAAGAAGTAGAGAGCTTAAGACTAAGGAGTTCTGAATTTGAAGGAGTTGTGGTTAAACCTGGCTCAGTTGTGCCACTGGACGTAGGCTCAGCCACACAGTTGGACATATTTGCTGAATTTGAAATCGAATTTTTGGCATCCGAAGGGATTGACAAGAACAATGTAGGCTGCGGAAGTGGAGCTGTTGACAGAAGTGCTTTGGGACCATTTGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAACTAACACGAATTTATTTCCATCCTTCTAGTACTATTAGCGATGGCAGTTTAACCACTTTCTTCTGTGTTGATGAAACAAGGTCATCAAAGGCTCCTGATGTTTCAAAGCTTGTTTTTGGAAGCAAAGTTCCAGTTCTCAgtgatgaaaaattatcaatgagGGTATTGGTTGACCATTCAATCATTGAGAGCTTTGCTCAGGGAGGGAGAACTGTGATCTCATCTAGAGTTTATCCAACAGAAGCAATATATGGAGCTGCAAGATTGTTTCTGTTCAACAATGCAACGGATATAAACATCAAGGCCTCGCTCAAGATTTGGCAATTGAGCTCGGCTTTTATACGCCCCTTTCCCTTTGACTAG 1914 0.4316 MGTNPDLEHAPQIPLLNPPSSLARESGRRVQKGTLVFIVSIVFLMSLVALIINLQSHEPLEKQQNNNIMKPFVTETKSVPLHPRGVAEGVSAKSNPYLSQMASYNWTNAMLSWQRTAFHFQPERNWMNGPLFYMGWYHIFYQYNPDSAVWGNITWGHAVSRDLIHWFYLPIALVPNRWFDINGVWSGSATLLPDGKIVMLYTGNTEKTVQVQNLVYPANLSDPLLLDWVKYTDNPVLVPPLGIDSKDFRDPTTAWIGPDEKWRVTIGSKVNKTGLSLVYKTKDFIHYELSDNYLHAVPDTGMWECVDFYPVSVNGPNGLDTSINGPAVKHVLKASLDDTKVDHYAIGTYFIENDTWVPDNPHQDVGIGLKLDYGRYYASKTFYDQHKRRRVLWGWINESDSEIADLKKGWASLQTLPRTVVFDKKTRTNLLQWPVEEVESLRLRSSEFEGVVVKPGSVVPLDVGSATQLDIFAEFEIEFLASEGIDKNNVGCGSGAVDRSALGPFGILAIADDQLSELTRIYFHPSSTISDGSLTTFFCVDETRSSKAPDVSKLVFGSKVPVLSDEKLSMRVLVDHSIIESFAQGGRTVISSRVYPTEAIYGAARLFLFNNATDINIKASLKIWQLSSAFIRPFPFD 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3293 637 MobiDBLite consensus disorder prediction 1 24 - -
Ssu3g3293 637 SUPERFAMILY Arabinanase/levansucrase/invertase 112 435 IPR023296 -
Ssu3g3293 637 SMART glyco_32 119 586 IPR001362 GO:0004553|GO:0005975
Ssu3g3293 637 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 25 634 - -
Ssu3g3293 637 Pfam Glycosyl hydrolases family 32 N-terminal domain 119 434 IPR013148 -
Ssu3g3293 637 SUPERFAMILY Concanavalin A-like lectins/glucanases 434 630 IPR013320 -
Ssu3g3293 637 Gene3D Glycosyl hydrolase domain; family 43 123 445 IPR023296 -
Ssu3g3293 637 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 25 634 - -
Ssu3g3293 637 Pfam Glycosyl hydrolases family 32 C terminal 437 625 IPR013189 -
Ssu3g3293 637 Gene3D - 446 626 - -
Ssu3g3293 637 Pfam Beta-fructofuranosidase, N-terminal domain 22 111 IPR021792 GO:0004564
Ssu3g3293 637 CDD GH32_Fruct1-like 125 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3293 Ssu-Chr3 89492033 89498981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3293 12 634 Glycoside Hydrolase AT1G12240 57.651 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3293 K01193 - gmx:100814788 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3293 3 89492033 89498981 Ssu3g3293 3 89492033 89498981 ECH