Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3288 ATGGTTCTGTCTCAGAAGCTTCACGAAGCTTTCAAAGGCACCGTCGAGAGGATCACAGGCCCCCGAACAGTTTCCGCCTTCAAAGAAAAAGGAGTTCTCAGTGTCTCCGAGTTCGTTACCGCCGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTGGGAATCGGGTGAGCCTGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGTGCCTTGTCTTCGGAGAGCTGCATCTGTTGAAGAAGAATATGAAGCTGCCGGAGGGGAAGTTCTACTCGATGATGAAGATAATGATGGGTGGCTAGCAACTCATGGGAAACCTAAAGAAACCAAATCTGAGGAGGATGAGAATTTACCTTCCATGGAAAGCCTAGAAATCAGCAGAAAGAGTTCTATTAAGCAAATTCCTTCCTACATGGGAGCTGAGGAGGAAGAAGATATTCCAGATATGGCAGAGTTTGAGGATACTTCCAATGTTATCGAAAATGATCCTTCCACATATCTAGTCGCTCATGAACCTGATGATGATAATATTCTACGAACTCGAACTTACGATGTCAGCATCACGTATGATAAATATTATCAAACACCGCGAGTATGGCTTACTGGGTATGATGAGTCAAGAATGCTTTTGCAACCAGAACTTGTCCTTGAAGATGTTAGTCAAGACCATGCACGCAAAACAGTAACGATTGAGGACCACCCTCACTTGCCTGGGAAGCATGCATCTATTCATCCATGTCGACATGGAGCAGTGATGAAGAAAATCATTGATGTGTTGATGTCGCGTGGAGTTGAGCCTGAAGTTGACAAGTACCTATTCTTATTCCTAAAATTTATGGCTTCTGTAATTCCAACAATTGAGTATGATTACACGATGGACTTTGATCTTGGTAGCTCCAGCAATTGA 933 0.4416 MVLSQKLHEAFKGTVERITGPRTVSAFKEKGVLSVSEFVTAGDNLVAKCPTWSWESGEPGKRKPYLPPEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDDEDNDGWLATHGKPKETKSEEDENLPSMESLEISRKSSIKQIPSYMGAEEEEDIPDMAEFEDTSNVIENDPSTYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLEDVSQDHARKTVTIEDHPHLPGKHASIHPCRHGAVMKKIIDVLMSRGVEPEVDKYLFLFLKFMASVIPTIEYDYTMDFDLGSSSN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3288 310 PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 1 305 IPR007135 GO:0019787
Ssu3g3288 310 MobiDBLite consensus disorder prediction 105 130 - -
Ssu3g3288 310 Gene3D - 150 295 - -
Ssu3g3288 310 MobiDBLite consensus disorder prediction 103 132 - -
Ssu3g3288 310 Pfam Autophagocytosis associated protein, active-site domain 37 299 IPR007135 GO:0019787
Ssu3g3288 310 PANTHER UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3 1 305 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3288 K08343 - gmx:100814257 599.742