Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3286 ATGGATCCAGATCAGGGCTCTTCAAGAGCCCGGAAGGTCAAGTACGTCCCCAGGAAGCCCAAACCCCAAGCTCACAAAACCGAACCCGACAATAAACGACACGAAGATAGGGCACAGGCTCGAGCTCTCTCGCGTCGATATGAGAATCTTGCAAGACGCGAGCCTAAAGtcgaaaaaaaatCTAGCGTGGAAGTTGCATTTTGTCCTGGAGTTTCATCACCTTCCCTCAGGACATATGGCACAAGTAAAGCTGTAGATAGTGGCACAAGCAGTGGCTCATCATCTAAATATTTTGCTAAGGAGAAAATTGGTTTAAGACGTTCTTCGGCTGCTACTGAGGATCAAAATGATAGTTGTATGATAGATGTTACTGATGATGCCACTAATGCATCAGCTAGGAAAATCAAAGGAGATTACAAGGAACCATGGGATTATGACCACTCTTACTATCCTACAACTCTTCCTCTGAGGAAGCCAAATTCTGGAGATCCAGAAATTCTTGATGAGGAAGAATTTGGGGAAGGTGCTGCTAGTGTGGAGTATGATGAGAATACTGTTAATCCTGCTACAGAACTCGGGCTCTTGGAGAAGAGTGAGCAACAAAGGATGCTTTTCTTTAAGTTTCCTACTACTTTGCCTTTGGACAAGCAGAGTAATAAGGGGAAGGAGCAAATTGGTACATCAACAGTATTGGGGAAGCCAAAGGGGATTGCCTTGGAAGAGTTGTCAAGGGGATATATGGGCAAAATGCTGGTGTACAAGAGTGGAGCTATCAAACTAAAACTAGGAGAAGCTTTGTTGGACGTGTCTCCAGGTTCAAATTGTGTATTTGCTCAAGATATTGTGGCGGTGAACACAGCACAGAAACAGTGCTGCAATCTTGGCGAGCTTAGCAAAAGAGTTGTTGTAGTTCCTGATCTTGATTCAATTGAACTGTAA 939 0.4377 MDPDQGSSRARKVKYVPRKPKPQAHKTEPDNKRHEDRAQARALSRRYENLARREPKVEKKSSVEVAFCPGVSSPSLRTYGTSKAVDSGTSSGSSSKYFAKEKIGLRRSSAATEDQNDSCMIDVTDDATNASARKIKGDYKEPWDYDHSYYPTTLPLRKPNSGDPEILDEEEFGEGAASVEYDENTVNPATELGLLEKSEQQRMLFFKFPTTLPLDKQSNKGKEQIGTSTVLGKPKGIALEELSRGYMGKMLVYKSGAIKLKLGEALLDVSPGSNCVFAQDIVAVNTAQKQCCNLGELSKRVVVVPDLDSIEL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3286 312 MobiDBLite consensus disorder prediction 21 61 - -
Ssu3g3286 312 MobiDBLite consensus disorder prediction 1 62 - -
Ssu3g3286 312 Coils Coil 33 53 - -
Ssu3g3286 312 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 312 IPR007811 GO:0003677|GO:0005666|GO:0006383
Ssu3g3286 312 Pfam RNA polymerase III RPC4 217 306 IPR007811 GO:0003677|GO:0005666|GO:0006383
Ssu3g3286 312 MobiDBLite consensus disorder prediction 76 95 - -
Ssu3g3286 312 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-RELATED 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3286 Ssu-Chr3 89375656 89379573 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3286 K03026 - gmx:100787575 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3286 3 89375656 89379573 Ssu3g3286 3 89375656 89379573 ECH