Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3284 ATGGCTCTCCTCACTTTCCCTCACTTTTCTTCCCATTTCTCCTCACTTGCTTCCTTCCCAAACACCCGCTCCTTCTCTCCAACTCGGCGTTACTGCTCGATGAAGGCAACTGGAACGGCCATTCTGTGGTTCAAGCACGATCTCCGAACCGATGATCACCCTGCGCTCCTCGCAGCCTCCAGTTTTCGATTACTGGTTCCTATTTACATCTTCGATCGTCGCATTCTTTCCCGTTTTTCCGATGAAACGCTGGAACTAGTTCTGCTGGCCGTGCAAGATTTGAGGAAGTCGTTGAAGGACCGCGGTTCCGATTTGATGATCAGATTCGGCAATGCTGAGAACGTCATACGGGAACTTGCAACGGAGGTCAAAGCCACTTGTGTGTTTGCGGAACAAGAGGTGGAGTACGAGCTACGTTTCATCATAGATGTGGTCAACCAGCGTTTGAAATCTGTCACAGTTCCACAAGGGACTCCAAGGATTGAATTATGGCAAACTCCATTTTACGATGTGAAGGATCTGCAAAATCTTCCTGCATCATATGATGAGTTCAAGAAACTTCGACTCCCTGTGACTACACCACTTCAGCTGTCAGTGTCAACATTACCTGGTGCAGACATGGAACTGGACTGGGGTGTTCTTCCCTCGTATGATGATATAAAGGGATTTATGGCTAGCAACCAACGGAAATCAGGCGCGAATTGGAGTTTAATTAAGGAAACATCAGCTGAAACCGTTTTACGCAGAAAAGTATTGAAGTCTGGCGATAACATTGAAAGAAGTTCTAGCTTTAGGCAAACGCAATCAAGGGAACGTAATGGATCTGTTTTTGTGACACAAAAGGGAAATGCTGTAGGAGGTAGTACAAACAATGTACTGAATGCATTGGCTGCATATCTGAGATATTTGGAGGGAACAGCTCGTGATGACTGGCAAGAGGTACATGAAAAAGTGCGTGCTTCTGAAAGTCGGAATGGAGCATCATTTATTGGACTATTCGGTCCTGCACTATCTCTTGGCATTATATCTAGAAGAAGAGTACATTATGAAGCTATCAAATATGAGAAGGAACGAAATGCAGGTTTCTTATCACCCTTTGGATATTCAGCTGCCACAATTGCAGCAGCAGTTGACGCCGTGTGCTCAATGGAGTGGTATTGGCTTATGGCTTTGAGAAATCAGATAAATAATGACGGAATGTACTCAACGCGGATATGGAAATGGAAAGGATTTCTTATCCAGTATACAGTTGCTGGTGAAGATGGTCCTGCTGTTCTTCTTGTGCATGGTTTTGGAGCCTTCTGGGAGCATTACCGTGACAACATACATGGTTTAGCTGAATCTGGAAATCGAGTTTGGGCTATTACTATGTTAGGATTTGGCAAATCAGAAAAGCCTAATGTTGTATATACTGAACTCTTGTGGGCTGAACTATTGAGAGATTTTATTGTTGATGTTGTGGGTGAACCAGTCCACCTTGTTGGCAACTCAATTGGTGGTTatcttgttgctattgttgctTGTATTTGGTGTGTTTTGATCAAATCCATTGTCTTGATCAACAGTGCGGGCAATGTCATCCCAAGATATTCATTCATACCATTGTCTAGAATTCAGGATAGACAAACTTCAGGGGCTTCCTGGTTGGGTTCTCGCATTCTTCTATTCTACTTGAGGCTAAGAACTCAAGAAACACTTAAGAAATGTTATCCAACTAGGGTTGAAAGAGCAGATGACCAGCTCATAAATGAAATACTAAGAGCATCATATGATCCTGGCGTGCTGGTGGTGTTGGAAAGCATCTTTAGCTTTAATCTTTCCATACCTGTTAACTTTCTTCTTCAAGATGTCAAGGAAAAGGTCCTAATTATACAGGGGATGAAAGATCCAATTTCTGACTCCAATTCCAAGGTGGCTTTGCTTAAAGAACATTGTGATGGAGTTATAATTAAGGAGTTAGATGCTGGTCATTGTCCGCAAGATGAGGTGCCAGAACGAGTGAATACTATCATTTGTGAGTGGATACTTGGTGTGGAAAGTAACATTTTGGCAGAGTGTCCAGCGTAA 2067 0.4282 MALLTFPHFSSHFSSLASFPNTRSFSPTRRYCSMKATGTAILWFKHDLRTDDHPALLAASSFRLLVPIYIFDRRILSRFSDETLELVLLAVQDLRKSLKDRGSDLMIRFGNAENVIRELATEVKATCVFAEQEVEYELRFIIDVVNQRLKSVTVPQGTPRIELWQTPFYDVKDLQNLPASYDEFKKLRLPVTTPLQLSVSTLPGADMELDWGVLPSYDDIKGFMASNQRKSGANWSLIKETSAETVLRRKVLKSGDNIERSSSFRQTQSRERNGSVFVTQKGNAVGGSTNNVLNALAAYLRYLEGTARDDWQEVHEKVRASESRNGASFIGLFGPALSLGIISRRRVHYEAIKYEKERNAGFLSPFGYSAATIAAAVDAVCSMEWYWLMALRNQINNDGMYSTRIWKWKGFLIQYTVAGEDGPAVLLVHGFGAFWEHYRDNIHGLAESGNRVWAITMLGFGKSEKPNVVYTELLWAELLRDFIVDVVGEPVHLVGNSIGGYLVAIVACIWCVLIKSIVLINSAGNVIPRYSFIPLSRIQDRQTSGASWLGSRILLFYLRLRTQETLKKCYPTRVERADDQLINEILRASYDPGVLVVLESIFSFNLSIPVNFLLQDVKEKVLIIQGMKDPISDSNSKVALLKEHCDGVIIKELDAGHCPQDEVPERVNTIICEWILGVESNILAECPA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3284 688 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 38 174 IPR006050 -
Ssu3g3284 688 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 39 197 IPR036155 -
Ssu3g3284 688 Pfam DNA photolyase 41 174 IPR006050 -
Ssu3g3284 688 Pfam Alpha/beta hydrolase family 425 668 IPR000073 -
Ssu3g3284 688 SUPERFAMILY alpha/beta-Hydrolases 401 675 IPR029058 -
Ssu3g3284 688 Gene3D HUPs 24 185 IPR014729 -
Ssu3g3284 688 Gene3D alpha/beta hydrolase 394 676 IPR029058 -
Ssu3g3284 688 PANTHER DNA PHOTOLYASE 31 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3284 Ssu-Chr3 89350675 89356365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3284 420 513 Acyl Lipid Metabolism Gene Families AT3G05600 33.333 2.96e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3284 - - gmx:100813721 1235.32