Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3283 ATGTCGAATGATAAAAACGCTACCAATCTGTCACGCACCTTCAAATACCTATTAGCTACTCAGTTCTTGTCAAGAGGGATTCCATTTATATTCAATACATGGATTGTAAGGCATCTTACAGAAGAGGACTATGCGCTGTATGCAGTGCAGTTCCATCTGTTTGTCacatgtattttatttcttagcCGGGAGGGCTTTCGACGAGCATGCTTGCGGATGGACGTGAAATGTGATGGCACTTCAATGGGAGATATTGTGAAGCTGATGAAAGTAGTGTGGATGAGTTTCCCACTTGgaatatttattacaattgtAGTATGCCTATTTGTCTTCTGGTGGCaacaaataagttattataGTCCACATGGGCAAGCTATCTTGATCAATGGTTTTGCGTGCATTTTGGAGCTCTTGGCTGAGCCTGTGTATATTCTTTCACAGAACTTTGTCTTGCTGGAATTACGGCTGATAGTTGAGACTGTAGCTACTCTATCGCGGTGCTTGACAATGTATTTTCTAATTGTCAAGCAAACTGGAATCGAAAAATCAATCATATTTGCATTGTCACAGTCTGCATATGGAGCCTGCTTATTTGTTGGTTATTGGGGCTATCTTTtggttttccaaaaatttaggGCTTCTTACCTTTTTCCATTCagAGAAGGAAAAGTGATTGATTTTGACCAGCAGCTGTCCAAGATGTGTATACTGTTTACCTTTCAATCCTTTCGAAAGTTGATCCTTCAGGAAGGAGAAAAGATAGTACTTGTATGGTTGGATACACCATATAATCAAGCAGTATATGGCCTGGTGGACAAATTAGGTAGCTTAGTGGTGAGACTCGTCTTTTTACCTTTCGAAGAAAGTTCATATGTAACATTTGCAAGGTCTGCTTCAGGACAATATCCAGGAAAAAGCAAGAAATTGGGAAACTGCTTGACGGAATCCCTTAAGTTAGTTTTGTTGATTGGCCTTGTTTTTATGGCATTTGGTCCAAGTTATTCTTATTCGCTTATTAGATTGCTGTATGGTGAAAAATGGAGTGATGGAGAAGCATCAATTGCCCTCCGCTGTTACTGCTTTTATGTCATTGTTTTGGCCATGAATGGAACCTCTGAAGCCTTTATGCATGCAGTTGCAACAGAGAGCCAACTCAAGCGTTCAAATGATTCACTACTTATATTCTCTTTGATCTATATAGTTTTGAACGTCCTGCTAATAAGGTTAGCTGGGGCAGTTGGCTTGATTATGGCAAATTCTCTCAATATGACCTTGAGGATTTTATACTCTGCTATATTCATAAAGAATTACTTCCAGGGATcttcctcattttctttctgtGGATGCTTGCCATCAGGATGGATTATTCTGTTACTTTCAGGTGTAATCACTCTCATTTCTGAGAATGTATTTTTGGACCGAGATAATTTCTGGCCATCATTTATGATCCATCTCTTTGTTGGGCTGGGTTGCTTCTGTGTGTCATCATATGTGATcTATTGCCGGGAAAAACCATTCATCCGAAGAATTATTCGCTTTAATGATCATTTGGACTGA 1557 0.3757 MSNDKNATNLSRTFKYLLATQFLSRGIPFIFNTWIVRHLTEEDYALYAVQFHLFVTCILFLSREGFRRACLRMDVKCDGTSMGDIVKLMKVVWMSFPLGIFITIVVCLFVFWWQQISYYSPHGQAILINGFACILELLAEPVYILSQNFVLLELRLIVETVATLSRCLTMYFLIVKQTGIEKSIIFALSQSAYGACLFVGYWGYLLVFQKFRASYLFPFREGKVIDFDQQLSKMCILFTFQSFRKLILQEGEKIVLVWLDTPYNQAVYGLVDKLGSLVVRLVFLPFEESSYVTFARSASGQYPGKSKKLGNCLTESLKLVLLIGLVFMAFGPSYSYSLIRLLYGEKWSDGEASIALRCYCFYVIVLAMNGTSEAFMHAVATESQLKRSNDSLLIFSLIYIVLNVLLIRLAGAVGLIMANSLNMTLRILYSAIFIKNYFQGSSSFSFCGCLPSGWIILLLSGVITLISENVFLDRDNFWPSFMIHLFVGLGCFCVSSYVIYCREKPFIRRIIRFNDHLD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3283 518 Pfam Rft protein 13 511 IPR007594 GO:0006488|GO:0016021
Ssu3g3283 518 PANTHER ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED 5 515 IPR007594 GO:0006488|GO:0016021
Ssu3g3283 518 CDD MATE_rft1 9 440 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3283 K06316 - gmx:100817452 973