Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3279 ATGTCGTTTCCATCGGAGAACCAGAACCCTAACCCCAGTCCGAGTCCGAGTCCTGCATTGAAGAAGCGGTGGTCGGACATATGGACGAAATCGAAACCCCTAAACCAAATGGTAATGGCGATGAAGCTCCACTCCGTCTCTCCTCGCACCGACAAAGCCAACCCGATTCTCTCCCCATTCCCCATCGCCGACCGAACCCTCCTCTTGTCCGACGTGCTCCTCCTCAGAATCCTCGCATTGCTCTCCGATTCCCCCTCTCAGCGAAACTCCAACTCCCTGGTCTGCAAGCGCTGGCTCAACCTCCAGGGCCGCCTCCTCCGCTCCCTCACGATCTCCGACTGGAACTTCCTCCTCTCCGGCAGGCTCATCCACCGCTTCCCCAATCTCAACCACGTCGATTTGCTCCCCGCCGCCTCCATTTCCCCTCGAAATTCCGGCATTCTCCTCAGCAACCGCGTTCTCTCAATCCACCTCGATTCCAGCTCCTCCCCCAATTGGTGCTTCTGCGAGGAAAACATTCTCCCCGTTGAGGTCATCGACAGCGGGTTAACTTCCCTCGCCGGCGGGTGCCCCAACCTGCGAAGGCTCCGAGTCATCGGTGCCAGCGAGATGGGGCTGCTGAGCGTGGCCGAGGAGTGTCCCACGCTGCAGGAACTGGAACTGCAGCGTTGCAGCGACGCCGTTCTGCGCGGGATCGCCGCGTGTGGGAATCTGCAGATTCTGAAACTGGTTGGGCACGTTGATGGCTTCTACAATTCGGTGGTTTCTGATGTTGGGTTGACTATTCTGGCTCAGGGGTGCAAGAGGCTGGTGAAGGTGGAGCTTAGTGGGTGTGAAGGGAGCTTTGATGGGATCAAGGCCATTGGGAAGTGCTGCCAAATGTTGGAGGAGCTGACCTTCTCTGATCATAGGATGGATGATGGGTGGCTCGCTGCTCTTTCGTTCTGCGACAATTTGAAGACGTTGAGGTTTACGTCTTGTAAGAGAATTGACCCCAACCCGGGGATGGAGGAGTATTTGGGTTGTTGTCCTGCGCTTGAACGGTTGCATTTGCAGAAATGTCAATTGCGGGATAAGAAGAGTGTTGCGGCTTTGTTTTCTGTGAGCAGGCCTGTCAGGGAGATTCTTCTCCAGGACTGCTGGGGACTGGATAATAGCATGTTCAGTTTTGCAATCATTTGCAGGCGGGTAAAGTTGTTTTACTTGGAAGGGTGCTCATTGCTAACGACAGAAGGTTTGGAGTCTGTAATTCATTCGTGGAAGGAGCTTCAGAGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGATAATGAGATCTCTCCTGCGCTCGCAGCCTTGTTTACCACTCTCAAGGAGTTGAGATGGAGCCCAGATACCAAATCACTTCTTCCATCAAGTCTTGTGGGGACAACCATGGGAAAGAAAGGTGGTAAATTTTTCAGAAGGACACGATAA 1455 0.5361 MSFPSENQNPNPSPSPSPALKKRWSDIWTKSKPLNQMVMAMKLHSVSPRTDKANPILSPFPIADRTLLLSDVLLLRILALLSDSPSQRNSNSLVCKRWLNLQGRLLRSLTISDWNFLLSGRLIHRFPNLNHVDLLPAASISPRNSGILLSNRVLSIHLDSSSSPNWCFCEENILPVEVIDSGLTSLAGGCPNLRRLRVIGASEMGLLSVAEECPTLQELELQRCSDAVLRGIAACGNLQILKLVGHVDGFYNSVVSDVGLTILAQGCKRLVKVELSGCEGSFDGIKAIGKCCQMLEELTFSDHRMDDGWLAALSFCDNLKTLRFTSCKRIDPNPGMEEYLGCCPALERLHLQKCQLRDKKSVAALFSVSRPVREILLQDCWGLDNSMFSFAIICRRVKLFYLEGCSLLTTEGLESVIHSWKELQSLRVVSCKNIKDNEISPALAALFTTLKELRWSPDTKSLLPSSLVGTTMGKKGGKFFRRTR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3279 484 SUPERFAMILY RNI-like 251 454 - -
Ssu3g3279 484 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g3279 484 PANTHER F-BOX PLANT-LIKE PROTEIN 46 464 - -
Ssu3g3279 484 Gene3D Ribonuclease Inhibitor 65 282 IPR032675 -
Ssu3g3279 484 Gene3D Ribonuclease Inhibitor 283 467 IPR032675 -
Ssu3g3279 484 PANTHER UNCHARACTERIZED 46 464 - -
Ssu3g3279 484 SUPERFAMILY RNI-like 100 245 - -
Ssu3g3279 484 SMART LRR_CC_2 213 235 IPR006553 -
Ssu3g3279 484 SMART LRR_CC_2 267 291 IPR006553 -
Ssu3g3279 484 SMART LRR_CC_2 394 419 IPR006553 -
Ssu3g3279 484 SMART LRR_CC_2 343 368 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3279 Ssu-Chr3 89232299 89234383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3279 K10268 - gmx:100812193 805.053