Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3265 ATGATGGACTGGACAGACCATCACTATAGGACTCTAGCACGCCTCATATCAAAACATGCTTGGCTGTACACAGAGATGCTTGCAGCTGAAACAATTGTCCATCAAAAGGACAATCTGGACAGATTCTTGGCATATTCTCCAGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGTAATATAGAAAGTTTGGCTAAAGCAACTGAGCTTGCTAATGCTTATTGCTATGACGAGATTAACTTAAACTGTGGATGCCCTAGTCCAAAAGTTGCTGGGCATGGGTGTTTTGGTGTGAGCCTTATGCTTAACCCCAAGTTTGTTGCTGATGCCATGTCAGCAATTGCTGCCAGCACAAATGCACCTGTCAGTGTCAAATGTCGAATTGGGGTGGATGATCATGATTCTTACAATGAGCTGTGTGATTTCATATACCAAGTTTCTTCTTTATCACCCACTAAGCATTTCATAATTCACTCGAGGAAGGCACTGCTCAATGGCATTAGCCCTGCTGAAAATAGGAGTATTCCTCCGCTAAAATATGAATACTTCTATGGCCTCTTACGTGACTTTCCTGACCTAACGTTTACAATCAATGGTGGCATTACTAGTGTTGATGAGGTCAGTGCAGCTCGAGAATCTGGGGCTCATGGTGTTATGGTTGGACGTGCAGCATACAACAACCCTTGGCATATTTTGGGACATGTTGATGCTGCAATTTATGGTACACCAAGCTGTGGTCTTACACGTCGTCAGGTTCATTTACAGAATGTCCTTGAAAAATATCTAATCTATGGGGACTCCGTGTTGGAAAAATATGGACGAAGGCCAACTATGCGAGATATTGTGAAGCCTTTACTCAATCTTTTCCATTCGGAACCCGGGAATGGACTTTGGAAGCGCAAAGCAGACGCTGCTTTCAAAAATTGCACGACAATCGAATCATTTTTTGAAGAAACCCTTGTAGCAATTCCTGACTCAGTATTGGATTCGCCTGTTGCGGAACCACCACCTGGCCGTGGAGATCTTTTTGCTAACATGCACAATTTATTGCCTCCTCCATACAGAACAAGAGAAGCAGCAGTAACTATTTGCGCTTAG 1098 0.4344 MMDWTDHHYRTLARLISKHAWLYTEMLAAETIVHQKDNLDRFLAYSPDQHPIVLQIGGSNIESLAKATELANAYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVADAMSAIAASTNAPVSVKCRIGVDDHDSYNELCDFIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVSAARESGAHGVMVGRAAYNNPWHILGHVDAAIYGTPSCGLTRRQVHLQNVLEKYLIYGDSVLEKYGRRPTMRDIVKPLLNLFHSEPGNGLWKRKADAAFKNCTTIESFFEETLVAIPDSVLDSPVAEPPPGRGDLFANMHNLLPPPYRTREAAVTICA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3265 365 Pfam Dihydrouridine synthase (Dus) 1 311 IPR035587 -
Ssu3g3265 365 PANTHER TRNA-DIHYDROURIDINE SYNTHASE 1 361 - -
Ssu3g3265 365 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 1 361 IPR004653 GO:0002943|GO:0017150
Ssu3g3265 365 Gene3D - 246 313 - -
Ssu3g3265 365 PIRSF Dus 1 335 IPR001269 GO:0008033|GO:0017150|GO:0050660
Ssu3g3265 365 CDD DUS_like_FMN 1 229 IPR035587 -
Ssu3g3265 365 SUPERFAMILY FMN-linked oxidoreductases 1 301 - -
Ssu3g3265 365 Gene3D Aldolase class I 1 234 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3265 Ssu-Chr3 89045200 89049568 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3265 K05539 - gmx:100779457 700.664