Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3264 ATGGGATTTGATAATGAGTGCATAGTGAACATTCAATCTCTTGCTGGAGAGTACTTCTGTCCAGTCTGTCGGCTGCTTGTATTTCCAAATGAAGCTTTGCAGTCACAATGTACTCATTTATACTGCAAGCCGTGTTTGACGTACACTGTGAGCACTACAAGGGCTTGCCCATATGATGGTTACTTGGTCACTGAGGCAGATTCCAAGcctctGACAGAGTCAAATAAGGCACTTGCTGAAACTATTGGAAAAATAGCAGTTCATTGCCTTTATCATAGGAGTGGATGCACATGGCAAGGAACCTTGTCTGAGTGCACATCTCATTGTGCTGGATGTGCTTTTGGCAATTCTCCTGTTGTTTGCAACAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAGCATGCACAAAATTGCCCTGGTGTGCAAGGTCAGGTACAGCAGGTGGCCATTACCCAGGATCCTTCAGCTACTAGTGCTGTTGCTTCTACAGATCAGAACCAGACTGCTGCTCCAGTTGCAGCAACGGCTTCACAAGCTCTCACTTCTCAAACTGCTGTCCCAACTACAATGCCTGGGCAGGTTTCAAATCAGCTACCCAACTCAGCTTCCCAAACCCAAGCTTTAGTTCAAACTGCTGTGCAGCCAACGGCAGAGCAATGGTATCAGCAGCAACAATATCAACAATACTACCAGCAATATCCTGGACAAGATCCTTACCAACAGCAGTATCAACATTACTACCCCTATCAACAGCCTGTGGTTCCACAGTACCAGCAGGCCTATGGTCAGCCCCAACCTCAGTTTCAATCACAGCCCCAGGCCCAGCTTCAACCTGTGCCCCAGCCACAGGCCCAACACCAATCTCAGCCTCAACTGCAACCACAGCCTCAGGCACAAGGACTGTCCCAACCACCTTCACATATTCAGGCTCCCGTTGCCCCACCATCTCAGAATCAGATGCAAGTTCAACAACAACCACAGCAACTTCAATCTGCTGTGCAGCCACATCATGGTCAGACAAGTCACGCACCAGGCCATGGTCAAGTCCTCCCTCAGTCTCAGACTCAGCCTTATCCGTACCCCCAAGTTCAGCCTCATTCTATCCAATCTCAACCccaacaacatatgcaaatGCCTCCTTATCAGCAGCCGCATCCTCAAATGCAGCATTCTCAACCTCAAATTCAACAACCAGTTCAGAAGTATCCTGTTCCTCAACTCCAAGTTCATACACAACTGCAGCCTAATGCTCCAGTTCAACATCTTTCTCAGGTCCCAATGCACCCTCACCAGCCGGTGACTCCTAATGTCCAGCCGCAAGTGCAAAATGCAATGTCACATTCAGTGACAGGGCATCACTCTTATCCCCAACCTCTGCCTCACCCGAATATGCAACCGGGAGTCCCTCAACATACTATGCACATGCATCCTCAAAGTGGGCCTCAACCCCAGGCCCATCACCATGTCCAGATGCAGACTCAGTTTCCTCCACAAATTCCAACGACACGTCCTAATCAATCTTATGCCATGTTTCCTAACCAGCAACAGCCAGCTTTGTTGTCTTCATCAGTTCAGGGCCAAACTACCCCTCCTTTGCAACAGCAACCATTGTATACTCATAATCAACAACCTGGGCAAATCAACCAACATCCTACTTTGCAACCTGTTCAACAAATACCACAGCAGCCGTTTGGACAACACCAAATGCATATGCCATCTCATTTACGACCCCAAGGTCCAGCACATTCATTTCCCAAGCATGCTTATCCACAGTCGCAGGGTAGTACTGCACTATCAAATAGCATTCAGCTCAGTCAATCTCAAAATGCTTCAGGAAGGCCTTTAGTTCCTAGTCATACAGGACACCTACAGCCATTTGCACAATCTACCAATACCATTCCAGTTAGACCTGGGCAAAATGGTGCTGGCTACCTGCCTGCAAACCAGAAATTGTTGGTTGGGACCAATAATCAAGTACAGTTGCCTTCTGAATTGCAGTCTAGGGCACCAGAATCAATTGAAAGACAAGGTGATGTTGTAGAGCAACAAACTGACTCTACTTCTGGGAAACtaggtaaaatttttaaagatttggaCACGGTGCCTGGATCAGCAAATGAGTTGAAATCTGAAAAAGTTGAAACGGATTTGAAACCAATTGAGGTTGGGAATAAGCAAAATAGTGAAGATGCACACACTCTGAAGACTTCAGTCCCAAATGCCAATGCATTAGAAAATGGTGATTCTGTGAATAAGAATCTTGGGATGGGGGAGGCTGCTGAAAGCAATTGGAAGCCTTCAAGTGGTAATAAATCAGGTGGTGCAATGCATGGGGTTCAAAATGACAGTAATGAGCATTCTGTCCAAGGCAATAAATTTCAAGATGGACATCCACCAAAGACAGAGACAAAACTCCCTGAGTCAGAAACTGATAAATTGTGTAATGATGACAATCCTGCACCATCTGTCTCTCAAAGCAATGGTGGTTTTGCTCAGCTGTCTCACCCAGCCACTTTTACTGATCAGAGTAAGCATCAGCAACCAATGATTAATTATGGGCCTCCTTTTGTCCAGCAGAGGTCTTCTGCAATGTTAGCATCACAAGTGCCACATCCAACGGTTCCAAATCAACCACTCTCTTCAGGGCACTCATCAACCCTTGTTAGGAATCATGGGTCTGCCCATGCTCTTCATTCAGGACAGCCTTCAACAGAGAATTTTCCGCCAACCATGTTTAAGCAACCACAAGATTCTGACATTACTCCAGGGCGAAGCTTTCAACCTCAATCTCTTGGACCCCCACGACCATTTAACCAAGTCCATGAGCCTCCTTTCCATGGTGGAGCATCCAATTTGGCTCGTCTTGGAGGGCCTCAATTTGGTGCACCACTTCCTGGAGATATGCATGGTCGAATGACAGCCAACTTACCACCACATGCTCCTGACGGTTTTGGTTTGCAGGATGAAAGGTTCAAACCTTTCCATGTTCCAaatcaacaaaatattgataGAAGAGAGTTTGATGATGATCTTAAGAAATTCTCTAGGCTGCCTTTGGATGCTGAACCAGTTTCTAAATTTGGAAATTATTCATTAGGTGCACATGAAGCTGGAAAGAGACCGGTTGGTATTCATGATGATATCATTAAAAGATCAGGTTCTACTCTTCATCCTGGCTATCTTGGACCGGGTCCTGGATATGGGAGACATCATATGGATAGTATGGCTCCAAGAAGTCCTGTTAGTGAATATGCTGAGATGTCCTCCCGGAGATTGGGGCCCCACTCTGGCAGTCTAGTTGGTAAATCAGGCATAGATGATTTTGATGGCAGAGTTGCACATCGTTTTGGCGAGTTCCGTGAGAGTCGGTTTCCTCATTTGCCTAGCCATTTGCATAGAGATGAATTTGATGGTTTTGGTAACTTTCGAATGGGTGAACATCCAAGGAGTGGTGATTTCATTGGTCAAGATGAATTTGCTGGCCATTTTCGCAGGGGTGAACATTTGGGTCCACATAATTTTCCTAGACATTTGCAGCTTGGGGAGCCTATTGGTTTTGGTGCCCATCCTCGTCATATGAGAGCGGTTGAACTTGGTGGTTTTCGTAGTTTTGAATCTTTCAGCAAAGGCAATCGGCCAGGTCACCCGCAACTTGGTGAGCCTGGGTTCAGGAGCAGTTTTTCTCTTCCAGGGTTTCCTAATGATGCTGGATTTTTAACAGGAGATATCAGGTCATTTGATAATTTGAGGAGAAGGAAGGCTTCTAGCATGGGGTGGTGCCGGATATGTAAAGTTGACTGTGAAACAGTAGAAGGTTTGGATTTGCATTCGCAAACCAAGGAGCACCAGAAGATGGCCATGGATATAGTTAAAACAATCAAACAAAATGCGAAGAAACAGAAATTaATACCCAGTAAACAACCCTCAGTTGATGAGGGAAACAAGACAAACAATACTGGTTTTGAGGGTCGTGGAAATAAGCATTGA 3993 0.4535 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYTVSTTRACPYDGYLVTEADSKPLTESNKALAETIGKIAVHCLYHRSGCTWQGTLSECTSHCAGCAFGNSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQVQQVAITQDPSATSAVASTDQNQTAAPVAATASQALTSQTAVPTTMPGQVSNQLPNSASQTQALVQTAVQPTAEQWYQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQPVVPQYQQAYGQPQPQFQSQPQAQLQPVPQPQAQHQSQPQLQPQPQAQGLSQPPSHIQAPVAPPSQNQMQVQQQPQQLQSAVQPHHGQTSHAPGHGQVLPQSQTQPYPYPQVQPHSIQSQPQQHMQMPPYQQPHPQMQHSQPQIQQPVQKYPVPQLQVHTQLQPNAPVQHLSQVPMHPHQPVTPNVQPQVQNAMSHSVTGHHSYPQPLPHPNMQPGVPQHTMHMHPQSGPQPQAHHHVQMQTQFPPQIPTTRPNQSYAMFPNQQQPALLSSSVQGQTTPPLQQQPLYTHNQQPGQINQHPTLQPVQQIPQQPFGQHQMHMPSHLRPQGPAHSFPKHAYPQSQGSTALSNSIQLSQSQNASGRPLVPSHTGHLQPFAQSTNTIPVRPGQNGAGYLPANQKLLVGTNNQVQLPSELQSRAPESIERQGDVVEQQTDSTSGKLGKIFKDLDTVPGSANELKSEKVETDLKPIEVGNKQNSEDAHTLKTSVPNANALENGDSVNKNLGMGEAAESNWKPSSGNKSGGAMHGVQNDSNEHSVQGNKFQDGHPPKTETKLPESETDKLCNDDNPAPSVSQSNGGFAQLSHPATFTDQSKHQQPMINYGPPFVQQRSSAMLASQVPHPTVPNQPLSSGHSSTLVRNHGSAHALHSGQPSTENFPPTMFKQPQDSDITPGRSFQPQSLGPPRPFNQVHEPPFHGGASNLARLGGPQFGAPLPGDMHGRMTANLPPHAPDGFGLQDERFKPFHVPNQQNIDRREFDDDLKKFSRLPLDAEPVSKFGNYSLGAHEAGKRPVGIHDDIIKRSGSTLHPGYLGPGPGYGRHHMDSMAPRSPVSEYAEMSSRRLGPHSGSLVGKSGIDDFDGRVAHRFGEFRESRFPHLPSHLHRDEFDGFGNFRMGEHPRSGDFIGQDEFAGHFRRGEHLGPHNFPRHLQLGEPIGFGAHPRHMRAVELGGFRSFESFSKGNRPGHPQLGEPGFRSSFSLPGFPNDAGFLTGDIRSFDNLRRRKASSMGWCRICKVDCETVEGLDLHSQTKEHQKMAMDIVKTIKQNAKKQKLIPSKQPSVDEGNKTNNTGFEGRGNKH 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3264 1330 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1 1329 - -
Ssu3g3264 1330 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 565 646 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 671 847 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 895 936 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 895 941 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 446 552 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 1300 1330 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 347 400 - -
Ssu3g3264 1330 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 624 639 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 799 816 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 711 727 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 262 340 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 477 552 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 1298 1330 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 590 617 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 1056 1103 - -
Ssu3g3264 1330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 118 IPR013083 -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 817 847 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 728 751 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 262 400 - -
Ssu3g3264 1330 SUPERFAMILY RING/U-box 13 73 - -
Ssu3g3264 1330 SUPERFAMILY TRAF domain-like 84 141 - -
Ssu3g3264 1330 MobiDBLite consensus disorder prediction 765 798 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3264 - - gsj:114380210 1678.69